scholarly journals Characterization of deep neural network features by decodability from human brain activity

2019 ◽  
Vol 6 (1) ◽  
Author(s):  
Tomoyasu Horikawa ◽  
Shuntaro C. Aoki ◽  
Mitsuaki Tsukamoto ◽  
Yukiyasu Kamitani
2017 ◽  
Author(s):  
Guohua Shen ◽  
Tomoyasu Horikawa ◽  
Kei Majima ◽  
Yukiyasu Kamitani

AbstractMachine learning-based analysis of human functional magnetic resonance imaging (fMRI) patterns has enabled the visualization of perceptual content. However, it has been limited to the reconstruction with low-level image bases (Miyawaki et al., 2008; Wen et al., 2016) or to the matching to exemplars (Naselaris et al., 2009; Nishimoto et al., 2011). Recent work showed that visual cortical activity can be decoded (translated) into hierarchical features of a deep neural network (DNN) for the same input image, providing a way to make use of the information from hierarchical visual features (Horikawa & Kamitani, 2017). Here, we present a novel image reconstruction method, in which the pixel values of an image are optimized to make its DNN features similar to those decoded from human brain activity at multiple layers. We found that the generated images resembled the stimulus images (both natural images and artificial shapes) and the subjective visual content during imagery. While our model was solely trained with natural images, our method successfully generalized the reconstruction to artificial shapes, indicating that our model indeed ‘reconstructs’ or ‘generates’ images from brain activity, not simply matches to exemplars. A natural image prior introduced by another deep neural network effectively rendered semantically meaningful details to reconstructions by constraining reconstructed images to be similar to natural images. Furthermore, human judgment of reconstructions suggests the effectiveness of combining multiple DNN layers to enhance visual quality of generated images. The results suggest that hierarchical visual information in the brain can be effectively combined to reconstruct perceptual and subjective images.


2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Da-Wei Li ◽  
Alexandar L. Hansen ◽  
Chunhua Yuan ◽  
Lei Bruschweiler-Li ◽  
Rafael Brüschweiler

AbstractThe analysis of nuclear magnetic resonance (NMR) spectra for the comprehensive and unambiguous identification and characterization of peaks is a difficult, but critically important step in all NMR analyses of complex biological molecular systems. Here, we introduce DEEP Picker, a deep neural network (DNN)-based approach for peak picking and spectral deconvolution which semi-automates the analysis of two-dimensional NMR spectra. DEEP Picker includes 8 hidden convolutional layers and was trained on a large number of synthetic spectra of known composition with variable degrees of crowdedness. We show that our method is able to correctly identify overlapping peaks, including ones that are challenging for expert spectroscopists and existing computational methods alike. We demonstrate the utility of DEEP Picker on NMR spectra of folded and intrinsically disordered proteins as well as a complex metabolomics mixture, and show how it provides access to valuable NMR information. DEEP Picker should facilitate the semi-automation and standardization of protocols for better consistency and sharing of results within the scientific community.


2020 ◽  
Vol 4 (2) ◽  
pp. 90-96
Author(s):  
Ishita Charkraborty ◽  
◽  
Brent Vyvial ◽  

With the advent of machine learning, data-based models can be used to increase efficiency and reduce cost for the characterization of various anomalies in pipelines. In this work, artificial intelligence is used to classify pipeline dents directly from the in-line inspection (ILI) data according to their risk categories. A deep neural network model is built with available ILI data, and the resulting machine learning model requires only the ILI data as an input to classify dents in different risk categories. Using a machine learning based model eliminates the need for conducting detailed engineering analysis to determine the effects of dents on the integrity of the pipeline. Concepts from computer vision are used to build the deep neural network using the available data. The deep neural network model is then trained on a sub set of the available ILI data and the model is tested for accuracy on a previously unseen set of the available data. The developed model predicts risk factors associated with a dent with 94% accuracy for a previously unseen data set.


2019 ◽  
Vol 107 ◽  
pp. 102134 ◽  
Author(s):  
Blossom Treesa Bastian ◽  
Jaspreeth N ◽  
S. Kumar Ranjith ◽  
C.V. Jiji

2020 ◽  
Vol 14 (3) ◽  
pp. 034111
Author(s):  
A. Arjun ◽  
R. R. Ajith ◽  
S. Kumar Ranjith

2019 ◽  
Vol 31 (2) ◽  
pp. 025204 ◽  
Author(s):  
Murat Onen ◽  
Brenden A Butters ◽  
Emily Toomey ◽  
Tayfun Gokmen ◽  
Karl K Berggren

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