Nucleophilic attack at the carbonyl group

2019 ◽  
Vol 17 (2) ◽  
pp. 99-104
Author(s):  
Gennady B. Lapa ◽  
Elena B. Isakova ◽  
Elena B. Mirchink ◽  
Maria N. Preobrazhenskaya

<P>Background: The conjugates of antibiotics are new molecules that might show new antibacterial spectrum and overcome resistance of insusceptible bacterial strains. Modification of known antibiotics like Clarithromycin with active fragments is laborious and proven method to overcome resistance of such strains. Methods: The conjugates of Clarithromycin and Benzo[c][1,2]oxaboroles were synthesized using long linkers to extend antimicrobial spectrum of this antibiotic. Results and Discussion: Unexpected intramolecular deboronation of these bioconjugated was found to occur when the linker contained two or more CH2-groups. Molecular modeling was used to understand the source of instability and show a possibility of intramolecular complex of carbonyl group at C-9 in Clarithromycin core and hydroxy-borole moiety. This could facilitate nucleophilic attack of methanol used in reactions to destroy benzo[c][1,2]oxaboroles fragments and leave stable hydroxyl-aryl molecules. Conclusion: The loss of boron from benzo[c][1,2]oxoborole fragments leads to the significant decrease of antimicrobial activity of synthesized antibiotics.</P>


1982 ◽  
Vol 60 (10) ◽  
pp. 1192-1198 ◽  
Author(s):  
Margaret M. Kayser ◽  
Georges Wipff

A quantum mechanical study by the SCF abinitio method of the interaction of H− with methylsuccinic and 2,2-dimethylsuccinic anhydrides (naked and in the presence of a cation) suggests that nonperpendicular rearside attack cannot be the factor responsible for the regioselectivity of hydride transfer to the more sterically hindered carbonyl group. In this model, the nucleophilic attack at the less hindered carbonyl group is calculated to be of lower energy (with or without cation). Deformation of the planar succinic anhydride ring to the quasi-chair conformation is energetically favoured as it allows the nucleophile to attack both carbonyl functions antiperiplanar to a quasi axial C—H or C—C bond. The attack antiperiplanar to the C—CH3 bond is lower in energy than the attack antiperiplanar to the C—H bond suggesting that the reduction will occur at the sterically more hindered carbonyl group which is in agreement with the experimental findings.


1971 ◽  
Vol 49 (19) ◽  
pp. 3075-3085 ◽  
Author(s):  
H. Favre ◽  
Z. Hamlet ◽  
R. Lanthier ◽  
M. Ménard

Aptitude to ring expansion in the piperidine series, measured by the ratio of ring expanded ketone to epoxide, varies considerably according to the nitrogen atom substituent. This ratio is essentially the same in the case of the reaction of diazomethane on 4-piperidones and the nitrous acid deamination of the corresponding aminoalcohols. The values of the ratio are 0.01–0.1 for a phenylsulfonyl group, of the order 0.3–0.6 for a benzoyl group and slightly greater than 1 for a benzyl group. Electronic effects (inductive and field effects) are the cause of these differences. Parallels between the two reactions indicate that nucleophilic attack of diazomethane on the carbonyl group can lead to the ring expanded ketone and the epoxide.


2005 ◽  
Vol 388 (3) ◽  
pp. 721-730 ◽  
Author(s):  
Gideon GROGAN

The enzymatic cleavage of C–C bonds in β-diketones is, comparatively, a little studied biochemical process, but one that has important relevance to human metabolism, bioremediation and preparative biocatalysis. In recent studies, four types of enzymes have come to light that cleave C–C bonds in the β-diketone functionality using different chemical mechanisms. OPH [oxidized poly(vinyl alcohol) hydrolase from Pseudomonas sp. strain VM15C], which cleaves nonane-4,6-dione to butyrate and pentan-2-one is a serine-triad hydrolase. Dke1 (diketone-cleaving enzyme from Acinetobacter johnsonii) is a dioxygenase, cleaving acetylacetone to methylglyoxal and acetate. Fumarylacetoacetate hydrolase cleaves fumarylacetoacetate to fumarate and acetoacetate using a water molecule, activated by a catalytic His/Asp dyad, aided by a calcium ion that both chelates the enol acid form of the substrate and indirectly positions the water for nucleophilic attack at a carbonyl group. 6-Oxocamphor hydrolase cleaves nonenolizable cyclic β-diketones and is a homologue of the crotonase superfamily, employing a catalytic His/Asp dyad to activate a water molecule for nucleophilic attack at a carbonyl group on one prochiral face of the diketone substrate, effecting desymmetrizations of symmetrical substrates.


2012 ◽  
Vol 10 (38) ◽  
pp. 7763 ◽  
Author(s):  
Alberth Lari ◽  
Matuesz B. Pitak ◽  
Simon J. Coles ◽  
Gregory J. Rees ◽  
Stephen P. Day ◽  
...  

2001 ◽  
Vol 79 (2) ◽  
pp. 110-113 ◽  
Author(s):  
Malgorzata Dawid ◽  
Paul C Venneri ◽  
John Warkentin

Dimethoxycarbene, generated at 110°C in benzene by thermolysis of 2,2-dimethoxy-5,5-dimethyl-Δ3-1,3,4-oxadiazoline, reacted with cyclohexanone to afford 2,2-dimethoxyspiro[2.5]-1-oxaoctane. It is the first oxirane of a ketene acetal that could be isolated and characterized by 1H NMR-, 13C NMR-, and IR spectroscopy. The identical oxirane might be expected from conrotatory cyclization of the appropriate carbonyl ylide. That ylide was generated under identical conditions by thermolysis of an oxadiazoline precursor (3,4-diaza-2,2-dimethoxy-1-oxaspiro[4.5]dec-3-ene) (14). The ylide could either cyclize or fragment to dimethoxycarbene and cyclohexanone. Addition of 4-tert-butylcyclohexanone, to trap dimethoxycarbene in competition with the cyclohexanone generated from 14 and, to leave the ylide closure pathway as the only route to the oxirane, showed that the carbonyl ylide does cyclize. However, fragmentation of the carbonyl ylide is relatively fast compared to its cyclization and most of it fragments to dimethoxycarbene and cyclohexanone. Oxirane formation from the carbene and ketone is probably either a concerted cycloaddition or it occurs in two steps, by nucleophilic attack at the carbonyl carbon to form the C—C bond first, prior to ring closure. If the carbene is bonded first to O of the carbonyl group, as it is in the carbonyl ylide, subsequent formation of the C—C bond is too slow, relative to fragmentation of the ylide, to afford the oxirane ring efficiently.Key words: carbonyl ylide, dialkoxyoxirane, dimethoxycarbene, oxadiazoline, oxirane.


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