Umbrella sampling molecular dynamics simulations reveal concerted ion movement through G-quadruplex DNA channels
2017 ◽
Vol 19
(18)
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pp. 11017-11025
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Keyword(s):
We have applied the umbrella sampling (US) method in all-atom molecular dynamics (MD) simulations to obtain potential of mean force (PMF) profiles for ion transport through three representative G-quadruplex DNA channels: [d(TG4T)]4, [d(G3T4G4)]2, and d[G4(T4G4)3].
2012 ◽
Vol 116
(31)
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pp. 9363-9370
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Keyword(s):
1995 ◽
Vol 99
(29)
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pp. 11339-11343
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2010 ◽
Vol 952
(1-3)
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pp. 96-102
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2016 ◽
Vol 56
(10)
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pp. 2093-2102
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2019 ◽
Vol 38
(2)
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pp. 317-339
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2017 ◽
Vol 19
(28)
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pp. 18685-18694
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Keyword(s):