scholarly journals Synthesis of 2′-O-monohaloethoxymethyl-modified RNAs and their duplex formation ability

RSC Advances ◽  
2017 ◽  
Vol 7 (65) ◽  
pp. 41297-41303 ◽  
Author(s):  
Rintaro Iwata Hara ◽  
Masayuki Kageyama ◽  
Koichiro Arai ◽  
Naoki Uchiyama ◽  
Takeshi Wada
Keyword(s):  

We synthesized 2′-O-monohaloethoxymethyl-modified RNAs and evaluated their duplex formation ability.

Biochemistry ◽  
2013 ◽  
Vol 52 (5) ◽  
pp. 765-772 ◽  
Author(s):  
Brittany Rauzan ◽  
Elizabeth McMichael ◽  
Rachel Cave ◽  
Lesley R. Sevcik ◽  
Kara Ostrosky ◽  
...  

2008 ◽  
Vol 37 (3) ◽  
pp. 340-341 ◽  
Author(s):  
Naoto Maru ◽  
Koh-ichiroh Shohda ◽  
Tadashi Sugawara
Keyword(s):  
Triton X ◽  

1999 ◽  
Vol 77 (5-6) ◽  
pp. 1077-1084 ◽  
Author(s):  
R Scott Reese ◽  
Marye Anne Fox

Self-assembled monolayers of sulfur-terminated oligonucleotide duplexes were formed on flat gold surfaces, either by exposure of a self-assembled monolayer bearing one oligonucleotide strand to the complementary strand or by preformation of a oligonucleotide duplex that was then deposited on a fresh gold surface. Virtually identical spectral behavior was observed whether the duplex was produced before deposition or by in situ complementary association. With a duplex bearing an appropriate pyrene end-label, the resulting thin film was photoresponsive. Surface emission measurements show no evidence for pyrene aggregation on the modified surfaces. The polarity of the photocurrent, reflecting photoinduced electron transfer initiated by photoexcitation of pyrene, is opposite that expected from the oligonucleotide-mediated reduction of the appended pyrene excited state.Key words: oligonucleotide, self-assembled monolayer, duplex formation, photoelectrochemistry, surface emission.


2019 ◽  
Vol 37 (2) ◽  
pp. 365-378 ◽  
Author(s):  
Jules Gilet ◽  
Romain Conte ◽  
Claire Torchet ◽  
Lionel Benard ◽  
Ingrid Lafontaine

Abstract Convergent gene pairs can produce transcripts with complementary sequences. We had shown that mRNA duplexes form in vivo in Saccharomyces cerevisiae via interactions of mRNA overlapping 3′-ends and can lead to posttranscriptional regulatory events. Here we show that mRNA duplex formation is restricted to convergent genes separated by short intergenic distance, independently of their 3′-untranslated region (UTR) length. We disclose an enrichment in genes involved in biological processes related to stress among these convergent genes. They are markedly conserved in convergent orientation in budding yeasts, meaning that this mode of posttranscriptional regulation could be shared in these organisms, conferring an additional level for modulating stress response. We thus investigated the mechanistic advantages potentially conferred by 3′-UTR mRNA interactions. Analysis of genome-wide transcriptome data revealed that Pat1 and Lsm1 factors, having 3′-UTR binding preference and participating to the remodeling of messenger ribonucleoprotein particles, bind differently these messenger-interacting mRNAs forming duplexes in comparison to mRNAs that do not interact (solo mRNAs). Functionally, messenger-interacting mRNAs show limited translational repression upon stress. We thus propose that mRNA duplex formation modulates the regulation of mRNA expression by limiting their access to translational repressors. Our results thus show that posttranscriptional regulation is an additional factor that determines the order of coding genes.


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