Binomial tau-leap spatial stochastic simulation algorithm for applications in chemical kinetics

The Journal of Chemical Physics ◽

10.1063/1.2771548 ◽

2007 ◽

Vol 127 (10) ◽

pp. 104101 ◽

Author(s):

Tatiana T. Marquez-Lago ◽

Kevin Burrage

Keyword(s):

Stochastic Simulation ◽

Chemical Kinetics ◽

Stochastic Simulation Algorithm ◽

Simulation Algorithm

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Stochastic chemical kinetics and the total quasi-steady-state assumption: Application to the stochastic simulation algorithm and chemical master equation

The Journal of Chemical Physics ◽

10.1063/1.2971036 ◽

2008 ◽

Vol 129 (9) ◽

pp. 095105 ◽

Author(s):

Shev MacNamara ◽

Alberto M. Bersani ◽

Kevin Burrage ◽

Roger B. Sidje

Keyword(s):

Steady State ◽

Master Equation ◽

Stochastic Simulation ◽

Chemical Kinetics ◽

Stochastic Simulation Algorithm ◽

Chemical Master Equation ◽

Quasi Steady State ◽

Simulation Algorithm ◽

Stochastic Chemical Kinetics ◽

State Assumption

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Stochastic Simulation Algorithm for Gene Regulatory Networks with Multiple Binding Sites

Journal of Computational Biology ◽

10.1089/cmb.2014.0064 ◽

2015 ◽

Vol 22 (3) ◽

pp. 218-226 ◽

Author(s):

Mattia Petroni ◽

Nikolaj Zimic ◽

Miha Mraz ◽

Miha Moškon

Keyword(s):

Stochastic Simulation ◽

Gene Regulatory Networks ◽

Binding Sites ◽

Regulatory Networks ◽

Stochastic Simulation Algorithm ◽

Simulation Algorithm ◽

Multiple Binding Sites ◽

Multiple Binding ◽

Gene Regulatory

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A new stochastic simulation algorithm for updating robust reliability of linear structural dynamic systems

Safety, Reliability, Risk and Life-Cycle Performance of Structures and Infrastructures ◽

10.1201/b16387-281 ◽

2014 ◽

pp. 1929-1935

Author(s):

S Cheung ◽

S Bansal

Keyword(s):

Stochastic Simulation ◽

Dynamic Systems ◽

Stochastic Simulation Algorithm ◽

Simulation Algorithm ◽

Structural Dynamic ◽

Robust Reliability

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Physical Education Teaching Evaluation Based on Stochastic Simulation Algorithm

Advances in Intelligent Systems and Computing - Big Data Analytics for Cyber-Physical System in Smart City ◽

10.1007/978-981-33-4572-0_228 ◽

2020 ◽

pp. 1563-1567

Author(s):

Gao-xuan Wang

Keyword(s):

Physical Education ◽

Stochastic Simulation ◽

Stochastic Simulation Algorithm ◽

Teaching Evaluation ◽

Simulation Algorithm

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Validation data for a hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) method

Data in Brief ◽

10.1016/j.dib.2018.11.103 ◽

2019 ◽

Vol 22 ◽

pp. 11-15

Author(s):

Brian Drawert ◽

Bruno Jacob ◽

Zhen Li ◽

Tau-Mu Yi ◽

Linda Petzold

Keyword(s):

Stochastic Simulation ◽

Dissipative Particle Dynamics ◽

Stochastic Simulation Algorithm ◽

Particle Dynamics ◽

Simulation Algorithm ◽

Validation Data

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Multivariate Normal Approximation for the Stochastic Simulation Algorithm: Limit Theorem and Applications

Electronic Notes in Theoretical Computer Science ◽

10.1016/j.entcs.2015.06.011 ◽

2015 ◽

Vol 316 ◽

pp. 67-82 ◽

Author(s):

Vincent Picard ◽

Anne Siegel ◽

Jérémie Bourdon

Keyword(s):

Limit Theorem ◽

Stochastic Simulation ◽

Normal Approximation ◽

Stochastic Simulation Algorithm ◽

Simulation Algorithm ◽

Multivariate Normal ◽

Multivariate Normal Approximation

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S-Leaping: An Adaptive, Accelerated Stochastic Simulation Algorithm, Bridging $$\tau $$ τ -Leaping and R-Leaping

Bulletin of Mathematical Biology ◽

10.1007/s11538-018-0464-9 ◽

2018 ◽

Vol 81 (8) ◽

pp. 3074-3096 ◽

Author(s):

Jana Lipková ◽

Georgios Arampatzis ◽

Philippe Chatelain ◽

Bjoern Menze ◽

Petros Koumoutsakos

Keyword(s):

Stochastic Simulation ◽

Stochastic Simulation Algorithm ◽

Simulation Algorithm

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Hierarchical Stochastic Simulation Algorithm for SBML Models of Genetic Circuits

Frontiers in Bioengineering and Biotechnology ◽

10.3389/fbioe.2014.00055 ◽

2014 ◽

Vol 2 ◽

Author(s):

Leandro H. Watanabe ◽

Chris J. Myers

Keyword(s):

Stochastic Simulation ◽

Stochastic Simulation Algorithm ◽

Simulation Algorithm ◽

Genetic Circuits

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An Efficient Stochastic Simulation Algorithm for Bayesian Unit Root Testing in Stochastic Volatility Models

Computational Economics ◽

10.1007/s10614-011-9252-4 ◽

2011 ◽

Vol 37 (3) ◽

pp. 237-248 ◽

Author(s):

Yong Li ◽

Zhongxin Ni ◽

Jie Zhang

Keyword(s):

Stochastic Volatility ◽

Stochastic Simulation ◽

Unit Root ◽

Stochastic Simulation Algorithm ◽

Simulation Algorithm ◽

Stochastic Volatility Models ◽

Unit Root Testing ◽

Volatility Models

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Accelerating the Gillespie Exact Stochastic Simulation Algorithm Using Hybrid Parallel Execution on Graphics Processing Units

PLoS ONE ◽

10.1371/journal.pone.0046693 ◽

2012 ◽

Vol 7 (11) ◽

pp. e46693 ◽

Author(s):

Ivan Komarov ◽

Roshan M. D'Souza

Keyword(s):

Stochastic Simulation ◽

Graphics Processing Units ◽

Stochastic Simulation Algorithm ◽

Parallel Execution ◽

Simulation Algorithm ◽

Graphics Processing ◽

Exact Stochastic Simulation

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