Phylogenetic analysis based on nuclear DNA and morphology defines a clade of eastern Australian species of Acacia s.s. (section Juliflorae): the 'Acacia longifolia group'

2010 ◽  
Vol 23 (3) ◽  
pp. 162 ◽  
Author(s):  
Gillian K. Brown ◽  
Catherine Clowes ◽  
Daniel J. Murphy ◽  
Pauline Y. Ladiges
Keyword(s):  
Nuclear Dna ◽  
Molecular Data ◽  
Herbarium Specimens ◽  
Nuclear Rdna ◽  
Flora Of Australia ◽  
Informal Group ◽  
Australian Species ◽  
Cladistic Analyses ◽  
Acacia Longifolia ◽  
Morphological And Molecular Data

Seventeen Australian, phyllodinous species of Acacia s.s. (from sections Juliflorae and Phyllodineae) were analysed to test the monophyly and relationships of ‘the Acacia longifolia group’, an informal group recognised in the Flora of Australia. Analyses were based on both morphological and molecular data, with A. triptera as an outgroup. A total of 92 herbarium specimens was investigated, with 15 phyllode, inflorescence, flower, pod and seed characters scored. The ITS and ETS regions of nuclear rDNA were sequenced and combined with a larger dataset sampled from species of all major clades of Acacia, totalling 65 accessions. Cladistic analyses provided evidence of a clade that defines the A. longifolia group as follows: A. alpina, A. axillaris, A. courtii, A. dallachiana, A. derwentiana, A. floribunda, A. longifolia subsp. longifolia and A. longifolia subsp. sophorae, A. longissima, A. maidenii, A. mucronata, A. obtusifolia, A. orites, A. oxycedrus, A. phlebophylla, A. rhigiophylla and A. riceana (all sect. Juliflorae), but excluding A. verticillata (section Juliflorae) and A. genistifolia (section Phyllodineae). The A. longifolia group is recognised as including south-eastern Australian species with cylindrically spiked inflorescences and phyllodes with prominent anastomosing venation.

Pentachondra dehiscens sp. nov. - An aberrant new member of Styphelieae

2001 ◽  
Vol 14 (4) ◽  
pp. 513 ◽  
Author(s):  
W. Cherry ◽  
P. A. Gadek ◽  
E. A. Brown ◽  
M. M. Heslewood ◽  
C. J. Quinn
Keyword(s):  
New Species ◽  
New South ◽  
New South Wales ◽  
Molecular Data ◽  
Blue Mountains ◽  
Strong Affinity ◽  
South Wales ◽  
Cladistic Analyses ◽  
Morphological And Molecular Data ◽  
A New Species

A new species of Styphelieae collected from the Blue Mountains region of New South Wales is described. Cladistic analyses of morphological and molecular data show that the species has a strong affinity with the genus Pentachondra. The genus is redefined to accommodate the following features of the new species: a drupaceous fruit with 6–11 locules in which the mesocarp splits to release the separate pyrenes at maturity and a more complex inflorescence.

A new species of cat-eyed snake (Serpentes: Dipsadinae: Leptodeirini) from the Andes of southern Ecuador

Zootaxa ◽  
2020 ◽  
Vol 4895 (3) ◽  
pp. 357-380
Author(s):  
OMAR TORRES-CARVAJAL ◽  
JUAN C. SÁNCHEZ-NIVICELA ◽  
VALENTINA POSSE ◽  
ELVIS CELI ◽  
CLAUDIA KOCH
Keyword(s):  
New Species ◽  
Nuclear Dna ◽  
Sequence Data ◽  
Molecular Data ◽  
Genetic Distances ◽  
Dna Sequence Data ◽  
The Andes ◽  
Southern Ecuador ◽  
Morphological And Molecular Data ◽  
A New Species

Leptodeira is one of the most widespread and taxonomically problematic snake taxa in the Americas. Here we describe a new species of Leptodeira from the Andes of southern Ecuador based on morphological and molecular data. The new species is geographically close and morphologically similar to L. ornata and L. larcorum, from which it can be distinguished by having smaller dorsal body blotches, a longer tail, and shorter spines on the hemipenial body. The shortest genetic distances between the new species and its congeners are 0.02 (16S), 0.05 (cytb), and 0.18 (ND4). The new species is restricted to the Jubones River Basin in southern Ecuador, an area of endemism for other reptile species. Our phylogenetic analysis based on mitochondrial and nuclear DNA sequence data also supports recognition of the names L. larcorum (restricted to Peru) for “L. septentrionalis larcorum”, and L. ornata for populations of “L. s. ornata” from central and eastern Panama, western Colombia, and western Ecuador. However, some samples of “L. s. ornata” from Panama and Costa Rica, as well as the new species described herein, are not included within or more closely related to L. ornata, which is sister to the clade (L. bakeri, L. ashmeadii). 

Phylogeny of the Bryopsidaceae (Bryopsidales, Chlorophyta): cladistic analyses of morphological and molecular data

Phycologia ◽  
2000 ◽  
Vol 39 (6) ◽  
pp. 471-481 ◽  
Author(s):  
Geoffrey W. Woolcott ◽  
Kristin Knöller ◽  
Robert J. King
Keyword(s):  
Molecular Data ◽  
Cladistic Analyses ◽  
Morphological And Molecular Data

Allium urusakiorum (Amaryllidaceae), a new member of the Balkan clade of the section Oreiprason from European Turkey

Phytotaxa ◽  
2016 ◽  
Vol 275 (3) ◽  
pp. 228
Author(s):  
MINE KOÇYIĞIT ◽  
ALEXEY P. SEREGIN ◽  
NERIMAN ÖZHATAY ◽  
NIKOLAI FRIESEN
Keyword(s):  
New Species ◽  
Plastid Dna ◽  
Morphological Characters ◽  
Molecular Data ◽  
Morphological Description ◽  
Herbarium Specimens ◽  
Turkish Flora ◽  
Molecular Dataset ◽  
Morphological And Molecular Data ◽  
A New Species

The taxonomy of the Allium saxatile group (sect. Oreiprason) has been studied recently upon morphological and molecular data. New specimens collected from the European part of Turkey near the Istranca Mountains and identified as ‘A. saxatile’ proved to be a new species confirmed by sequences of internal transcribed spacer (ITS) and two plastid DNA regions (rpl32–trnL and trnL–trnF) and supported by morphological characters. Allium urusakiorum, a new species from the A. saxatile group, is described here through living and herbarium specimens. It is the only species of the sect. Oreiprason in the country and seems to be an endemic species of the Turkish flora. Characteristics of the species include morphological description, identification key, molecular dataset, and karyotype (2n = 16).

scholarly journals A new species of Cryptomonas (Cryptophyceae) from the Western Urals (Russia)

2020 ◽  
Author(s):  
Nikita A. Martynenko ◽  
Evgeniy S. Gusev ◽  
Pavel V. Kulizin ◽  
Elena E. Guseva ◽  
Kevin McCartney ◽  
...  
Keyword(s):  
New Species ◽  
Molecular Data ◽  
Lsu Rdna ◽  
Nuclear Rdna ◽  
Ural Mountains ◽  
Rdna Its2 ◽  
Rdna Sequences ◽  
Compensatory Base Changes ◽  
Morphological And Molecular Data ◽  
A New Species

A new species, Cryptomonas uralensis Martynenko, Gusev, Kulizin & Guseva sp. nov., is described from western slopes of the Ural Mountains (Russia) based on morphological and molecular data. Phylogenetic relationships inferred from nuclear SSU and LSU rDNA sequences show that the new species forms a clade with C. tetrapyrenoidosa Skuja emend. Hoef-Emden & Melkonian. Comparison of secondary structures of nuclear rDNA ITS2, including analysis of Compensatory Base Changes (CBC), confirms the separation between C. uralensis sp. nov. and C. tetrapyrenoidosa. Cell morphology and sizes of C. uralensis sp. nov. are very similar to C. tetrapyrenoidosa and C. pyrenoidifera, and C. uralensis sp. nov. may thus represent a species that can only be reliably identified using molecular data.

scholarly journals Defining phylogenetic relationship of Nepeta x tmolea and its parents via DNA barcoding

PhytoKeys ◽  
2019 ◽  
Vol 134 ◽  
pp. 83-96
Author(s):  
Taner Özcan
Keyword(s):  
Molecular Structure ◽  
Dna Sequences ◽  
Nuclear Dna ◽  
Molecular Data ◽  
Hybrid Nature ◽  
Molecular Approaches ◽  
Primer Sets ◽  
Morphological And Molecular Data ◽  
Chloroplast Dna Regions ◽  
Relationship Of

Nepeta viscida and N. nuda subsp. nuda and N. × tmolea were examined in this study. Mainly fresh leaf pieces, dried with silica grains, were used for DNA extraction procedures via DNA isolation kits. Standard PCR techniques were executed using three different primer sets (one nuclear DNA region (nrITS) and two chloroplast DNA regions (rpl32-trnL and trnA(Leu)-trnA(Phe)-trnL-F). DNA sequences were analysed and evaluated using different molecular approaches and software. Consequently, the inconstant molecular structure and hybrid nature of N. × tmolea specimens were shown and interpreted in this study. According to our result, N. × tmolea have some intermediate characters compared to its parents. nrITS data give more information phylogenetically, and also the most polymorphic loci are seen in nrITS data. Morphological and molecular data contribute to define separation of N. × tmolea. Consequently, the inconstant molecular structure and hybrid nature of N. × tmolea specimens were shown and interpreted in this study.

scholarly journals Experimental taxonomy exposes ontogenetic variability and elucidates the taxonomic value of claw configuration in MilnesiumDoyère, 1840 (Tardigrada: Eutardigrada: Apochela)

2016 ◽  
Vol 85 (2) ◽  
pp. 173-200 ◽  
Author(s):  
Witold Morek ◽  
Piotr Gąsiorek ◽  
Daniel Stec ◽  
Brian Blagden ◽  
Łukasz Michalczyk
Keyword(s):  
Nuclear Dna ◽  
Mitochondrial Gene ◽  
Molecular Data ◽  
Valid Species ◽  
Species Differentiation ◽  
28S Rrna ◽  
Configuration Change ◽  
Gene Coi ◽  
Diagnostic Key ◽  
Morphological And Molecular Data

In this paper we describe a new apochelan species, Milnesium variefidumsp. nov. from Scotland and provide novel morphological and molecular data for Milnesium berladnicorumCiobanu et al., 2014. The new species differs from the most similar M. berladnicorumby the presence of developmental dimorphism in claw configuration, absent or weakly developed cuticular bars under claws I-III, a different arrangement of cuticular pseudoplates, and by differences in the sequences of three nuclear DNA fragments: 18S rRNA (p-distance: 0.6%), 28S rRNA (2.0%), ITS-2 (9.3%), and on mitochondrial gene COI (12.4%). Although ontogenetic claw configuration change was suspected to occur in some Milnesiumspecies, we are the first to document it through the combined use of traditional, molecular and experimental methodologies. We discuss the implications of the observed phenomenon for the taxonomy of the genus and propose a new diagnostic key to all Milnesiumspecies described up to the end of 2015. We also review other traits used for species differentiation in the genus and offer recommendations to improve the quality of future descriptions as well as suggest a need for integrative redescriptions of the known species. Finally, we propose to suppress M. dujiangensisand M. tardigradum trispinosumand suggest that M. alpigenumand M. quadrifidumare valid species that require thorough redescriptions.

Analysis of a polyploid complex in Glycine with chloroplast and nuclear DNA

1990 ◽  
Vol 3 (1) ◽  
pp. 125 ◽  
Author(s):  
JJ Doyle ◽  
JL Doyle ◽  
AHD Brown
Keyword(s):  
Nuclear Dna ◽  
Molecular Data ◽  
Polyploid Complex ◽  
Diploid Progenitor ◽  
Nuclear Rdna ◽  
Central Pacific ◽  
Geographic Ranges ◽  
The Pacific ◽  
Repeat Class ◽  
Molecular Characters

Studies of chloroplast DNA and nuclear 18s–25s ribosomal genes have revealed considerable variation in Glycine subgenus Glycine, the perennial relatives of the cultivated annual soybean. We have used these molecular characters to investigate the origins and evolution of G. tabacina, a species that comprises a widespread polyploid complex in Australia and the islands of the southern and west-central Pacific. Two principal groups of accessions were detected in this species using molecular characters. These two types also differ morphologically and have distinct, though overlapping, geographic ranges; comparison with results of artificial hybridisation studies showed that sterility barriers exist between the two groups. Both types are fixed hybrids for nuclear rDNA, and share one rDNA repeat class, presumably derived from a common diploid progenitor. The two types had different maternal progenitors, based on cpDNA variation. One of the two polyploid types is polymorphic for cpDNA, and shares nearly all of its plastome variants with diploid accessions, suggesting multiple, independent origins of the polyploid from a pool of diploid progenitors. Molecular data suggest that polyploids have originated recently, and that dispersal from Australia to the islands of the Pacific has occurred several times.

WOOD ANATOMY OF THE TRIBE MILLETTIEAE WITH COMMENTS ON RELATED PAPILIONOID LEGUMINOSAE

IAWA Journal ◽  
2004 ◽  
Vol 25 (4) ◽  
pp. 485-545 ◽  
Author(s):  
Peter Gasson ◽  
Elspeth Wray ◽  
Brian D. Schrire
Keyword(s):  
Wood Anatomy ◽  
Secondary Growth ◽  
Molecular Data ◽  
Sensu Stricto ◽  
Axial Parenchyma ◽  
The Core ◽  
C 23 ◽  
Form Part ◽  
Cladistic Analyses ◽  
Morphological And Molecular Data

The tribe Millettieae has traditionally included some 43 to 47 genera although more recent phylogenetic evidence has shown that a smaller core-Millettieae group of c. 23 genera may form part of a recircumscribed Millettieae sensu stricto. We have examined the wood of 27 genera, 16 of which are in the core-Millettieae and the remaining 11 belong in 4 groups, mostly with closer affinities outside Millettieae s.str. The wood anatomy of the various genera is nevertheless very uniform. Most genera are diffuse porous with no predominant vessel pattern. They have paratracheal parenchyma ranging from scanty through vasicentric, aliform and confluent, and often banded. Rays are mainly up to 5 cells wide. Axial parenchyma and rays are nearly always storied. The lianas Paraderris elliptica, Derris uliginosa, Ostryocarpus cf. riparius and Wisteria spp. have alternating bands of xylem and phloem, which are also found in some Dalbergieae. Even in the genera without such anomalous secondary growth there are many similarities between the wood of Millettieae and Dalbergieae. The wood of some genera in Sophoreae and Swartzieae is also compared. Our observations will be put in the context of recent cladistic analyses on both morphological and molecular data by other authors.

scholarly journals The Culicidae (Diptera): a review of taxonomy, classification and phylogeny*

Zootaxa ◽  
2007 ◽  
Vol 1668 (1) ◽  
pp. 591-638 ◽  
Author(s):  
RALPH E. HARBACH
Keyword(s):  
Evolutionary History ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Molecular Evidence ◽  
Traditional Classification ◽  
Phenetic Classification ◽  
Cladistic Analyses ◽  
Morphological And Molecular Data ◽  
Stable Classification

The taxonomy, classification and phylogeny of family Culicidae are reviewed. The application of explicit methods of phylogenetic analysis has revealed weaknesses in the traditional classification of mosquitoes, but little progress has been made to achieve a robust, stable classification that reflects evolutionary relationships. The current phenetic classification is discussed in view of phylogeny reconstructions based on cladistic analyses of morphological and molecular data. It is concluded that the generic and suprageneric relationships and the validity and monophyly of the generic and subgeneric groupings of Culicidae are in need of extensive reappraisal. If the classification is to reflect evolutionary history, changes to the nomenclature of mosquitoes are inevitable. There is strong morphological and molecular evidence that subfamily Anophelinae and tribes Aedini, Culicini and Sabethini of subfamily Culicinae are monophyletic, but the other taxonomic groupings are not demonstrably monophyletic or have not been subjected to phylogenetic analyses.

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