scholarly journals Molecular phylogenetic analyses of Drakaeinae: Diurideae (Orchidaceae) based on DNA sequences of the internal transcribed spacer region

2014 ◽  
Vol 27 (1) ◽  
pp. 3 ◽  
Author(s):  
Joseph T. Miller ◽  
Mark A. Clements
Keyword(s):  
Dna Sequences ◽  
Internal Transcribed Spacer ◽  
Phylogenetic Analyses ◽  
Internal Transcribed Spacer Region ◽  
Orchid Species ◽  
Weak Support ◽  
Separate Genus ◽  
Rdna Sequences ◽  
Molecular Phylogenetic ◽  
Taxonomic Summary

Results of the analysis of rDNA sequences based on 55 collections representative of 32 Drakaeinae orchid species and outgroups supported the monophyly of the subtribe, with weak support for the inclusion of Spiculaea, and revealed six strongly supported monophyletic, well defined morphological groups. Caleana is monophyletic. Chiloglottis s.lat. is monophyletic when Simpliglottis and Myrmechila are included. Our results also suggested that the segregate genus Phoringopsis is better treated as part of Arthrochilus.There is sufficient molecular and morphological support for recognition of the leafless, mycroheterotrophic Thynninorchis to be maintained as a separate genus. A taxonomic summary is provided, including reassignment of taxa at generic ranks and new combinations for Caleana alcockii (Hopper & A.P.Br.) M.A.Clem., Caleana brockmanii (Hopper & A.P.Br.) M.A.Clem., Caleana disjuncta (D.L.Jones) M.A.Clem., Caleana dixonii (Hopper & A.P.Br.) M.A.Clem., Caleana gracilicordata (Hopper & A.P.Br.) M.A.Clem., Caleana granitica (Hopper & A.P.Br.) M.A.Clem., Caleana hortiorum (Hopper & A.P.Br.) M.A.Clem., Caleana lyonsii (Hopper & A.P.Br.) M.A.Clem., Caleana parvula (Hopper & A.P.Br.) M.A.Clem., Caleana terminalis (Hopper & A.P.Br.) M.A.Clem. and Caleana triens (Hopper & A.P.Br.) M.A.Clem.

Two new species of Barssia from China

Phytotaxa ◽  
2018 ◽  
Vol 374 (2) ◽  
pp. 129
Author(s):  
YU-YAN XU ◽  
LI-JIE GUO ◽  
TING LI ◽  
LI FAN
Keyword(s):  
New Species ◽  
Internal Transcribed Spacer ◽  
North China ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Internal Transcribed Spacer Region ◽  
Two New Species ◽  
Molecular Phylogenetic

Two new truffle species Barssia guozigouensis and B. luyashanensis are described and illustrated from North China based on morphological and molecular evidences. Morphologically, B. guozigouensis is diagnosed by its distinctly warty ascomata and solid gleba with small and irregular chambers, and B. luyashanensis is by its red brown ascomata with fine warts and gleba without chambers. Molecular phylogenetic analyses based on the ribosomal internal transcribed spacer region and 28S large subunit nrDNA supported the placement of the new species.

Kamalia indica, a new genus and species belonging to Diaporthales (Ascomycota, Fungi) described based on morphology and molecular phylogeny

Phytotaxa ◽  
2019 ◽  
Vol 425 (4) ◽  
pp. 233-243
Author(s):  
SHIWALI RANA ◽  
SANJAY KUMAR SINGH
Keyword(s):  
Dna Sequences ◽  
Internal Transcribed Spacer ◽  
New Genus ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Type Specimen ◽  
Morphological Description ◽  
Fungal Culture ◽  
Internal Transcribed Spacer Region

A fungal taxa isolated from leaf spots of Mallotus philippensis from Kangra district of North-Western Himalayan region of India is established as a new genus based on morphological characters of asexual-morphs, cultural characteristics and phylogenetic analyses of the partial nuclear ribosomal 28S large subunit (LSU) and internal transcribed spacer (ITS) rDNA sequence data. The generic placement of the genus has been determined based on DNA sequences from authenticated isolates. The present taxon has turned out to be distinct, showing nearly 90% identity with other known genera in Diaporthales based on nrDNA internal transcribed spacer region. The morphological description is provided for the new taxa and compared with the similar taxa belonging to the order Diaporthales. The culture was found to show heavy sporulation in all kind of media. The type specimen and ex type culture have been deposited in the Ajrekar Mycological Herbarium (AMH) and National Fungal Culture Collection of India (NFCCI-WDCM 932), respectively.

Gymnopus barbipes and G. dysodes, new records for Pakistan

Mycotaxon ◽  
2020 ◽  
Vol 135 (1) ◽  
pp. 203-212
Author(s):  
Malka Saba ◽  
Junaid Khan ◽  
Samina Sarwar ◽  
Hassan Sher ◽  
Abdul Nasir Khalid
Keyword(s):  
Phylogenetic Analysis ◽  
Ribosomal Dna ◽  
Dna Sequences ◽  
Internal Transcribed Spacer ◽  
New Records ◽  
Phylogenetic Analyses ◽  
Internal Transcribed Spacer Region

Morphological and phylogenetic analyses were conducted to identify Gymnopus species collected in Pakistan during 2013–14. Phylogenetic analysis was performed using internal transcribed spacer region (ITS) of ribosomal DNA sequences. Among the collected taxa, we identified Gymnopus barbipes and G. dysodes, represent new records for Pakistan. Their detailed descriptions and illustrations are also provided.

A new pratylenchid nematode, Hoplotylus japonicus n. sp. (Tylenchina: Pratylenchidae) from the rhizosphere of Japanese maple, Acer palmatum (Thumb.)

Nematology ◽  
2020 ◽  
Vol 22 (10) ◽  
pp. 1131-1140
Author(s):  
Jianfeng Gu ◽  
Munawar Maria ◽  
Yiwu Fang ◽  
Majid Pedram
Keyword(s):  
New Species ◽  
Dna Sequences ◽  
Internal Transcribed Spacer ◽  
Anterior Margin ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Dorsal Side ◽  
Lateral View ◽  
Molecular Phylogenetic ◽  
A New Species

Summary During quarantine inspections, a new species of Hoplotylus was detected from the rhizosphere of the Japanese maple, Acer palmatum, imported into China from Japan. Hoplotylus japonicus n. sp. is characterised by a stout 431-602 μm long body, well-developed 20.0-24.5 μm long stylet with tulip-shaped knobs having rounded sides in lateral view and a rounded anterior margin, excretory pore located slightly posterior to the hemizonid, usually empty, spermatheca, conical tail with a spike-like projection, which is distally smooth on the dorsal side, and males not found. It was morphologically compared with four currently known species of the genus, viz., H. femina, H. montanus, H. silvaticus, and H. sjacobi. In molecular phylogenetic analyses using 18S, 28S and internal transcribed spacer (ITS) ribosomal DNA sequences, the new species formed a clade with the only currently sequenced species of the genus, H. femina, in all phylogenies. This is the second species of the genus characterised by molecular data and the second species recovered from Japan.

scholarly journals Emmanuelia, a new genus of lobarioid lichen-forming fungi (Ascomycota: Peltigerales): phylogeny and synopsis of accepted species

2020 ◽  
pp. 76-94
Author(s):  
Antoine Simon ◽  
Robert Lücking ◽  
Bibiana Moncada ◽  
Joel A. Mercado-Díaz ◽  
Frank Bungartz ◽  
...  
Keyword(s):  
North America ◽  
Internal Transcribed Spacer ◽  
New Genus ◽  
Phylogenetic Analyses ◽  
Small Subunit ◽  
South American ◽  
South American Species ◽  
Internal Transcribed Spacer Region ◽  
Molecular Phylogenetic ◽  
Previously Treated

The former family Lobariaceae, now included in Peltigeraceae as subfamily Lobarioideae, has undergone substantial changes in its generic classification in recent years, based on phylogenetic inferences highlighting the polyphyly of the speciose genera Lobaria, Pseudocyphellaria and Sticta. Here we introduce the new genus Emmanuelia, named in honor of Prof. Emmanuël Sérusiaux for his extensive work on the Peltigerales. Emmanuelia currently comprises twelve species. It is superficially similar to the lobarioid genus Ricasolia, but differs by its apothecia, rimmed by overarching and often crenulate to lobulate margins, with the parathecium (proper excipulum) and the amphithecium (thalline excipulum formed by the thallus cortex) apically separated and of a different structure. Also, ascospore dimensions and shape differ between the two genera, with the ascospores of Emmanuelia being longer and narrower. Molecular phylogenetic analyses using DNA nucleotide sequences of the internal transcribed spacer region (ITS) and the small subunit of mitochondrial ribosomal DNA (mtSSU) confirm that Emmanuelia belongs to the Lobaria s.lat. clade and forms a monophyletic group sister to the lineage consisting of Dendriscosticta, Lobariella and Yoshimuriella. None of the available generic names of lobarioid lichens can be applied to this group, and consequently a new name is proposed for this new genus, which is typified with E. ravenelii comb. nov. Eleven other species are transferred to Emmanuelia: E. americana comb. nov., E. conformis comb. nov., E. cuprea comb. nov., E. elaeodes comb. nov., E. erosa comb. nov., E. excisa comb. nov., E. lobulifera comb. nov., E. ornata comb. nov., E. patinifera comb. nov., E. pseudolivacea comb. nov. and E. tenuis comb. nov. The genus is represented in North America by three species, including E. lobulifera, which is resurrected from synonymy with E. (Lobaria) tenuis, a South American species, and E. ornata, whose populations were previously treated under E. (Lobaria) ravenelii.

Buchwaldoboletus xylophilus and Phlebopus portentosus, two non-ectomycorrhizal boletes from tropical China

Phytotaxa ◽  
2021 ◽  
Vol 520 (2) ◽  
pp. 137-154
Author(s):  
HUI-JING XIE ◽  
CHUN-XIA ZHANG ◽  
MING-XIA HE ◽  
ZHI-QUN LIANG ◽  
XIAO-HUA DENG ◽  
...  
Keyword(s):  
Rna Polymerase Ii ◽  
Dna Sequences ◽  
Phylogenetic Analyses ◽  
Elongation Factor ◽  
Internal Transcribed Spacer Region ◽  
Tropical Asia ◽  
Line Drawings ◽  
Molecular Phylogenetic ◽  
Microscopic Features ◽  
Tropical China

Buchwaldoboletus xylophilus and Phlebopus portentosus (Boletales) are two non-ectomycorrhizal boletes, which are widely reported in tropical Asia. However, there is little information available about the taxonomy of these two boletes. Here, B. xylophilus and P. portentosus are redescribed based on morphology and molecular phylogenetic analyses of DNA sequences from nuclear 28S rDNA (28S), nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS), translation elongation factor 1-α gene (TEF1) and the RNA polymerase II second largest subunit gene (RPB2). Detailed descriptions, color photos of fresh basidiomata, and line-drawings of microscopic features of the two taxa are presented.

Infundibulicybe rufa sp. nov. (Tricholomataceae), a reddish brown species from southwestern China

Phytotaxa ◽  
2016 ◽  
Vol 266 (2) ◽  
pp. 134 ◽  
Author(s):  
QI ZHAO ◽  
YAN-JIA HAO ◽  
JIAN-KUI LIU ◽  
KEVIN D. HYDE ◽  
YANG-YANG CUI ◽  
...  
Keyword(s):  
Internal Transcribed Spacer ◽  
Phylogenetic Analyses ◽  
Biosphere Reserve ◽  
Its Region ◽  
Southwestern China ◽  
New Taxon ◽  
Line Drawings ◽  
Phylogenetic Placement ◽  
Molecular Phylogenetic ◽  
Pileus Surface

Infundibulicybe rufa sp. nov., is described from Jiuzhaigou Biosphere Reserve, southwestern China. It is characterized by the combination of the following characters: umbilicate to slightly infundibuliform, reddish brown pileus; decurrent, cream lamellae; cylindrical stipe concolorous with the pileus surface. Molecular phylogenetic analyses using the nuclear ribosomal internal transcribed spacer (ITS) region indicates that I. rufa is closely related to I. mediterranea and I. bresadolana. A description, line drawings, phylogenetic placement and comparison with allied taxa for the new taxon are presented.

A new species of Chlorociboria (Helotiales, Ascomycota) on herbaceous stems from China

Phytotaxa ◽  
2017 ◽  
Vol 312 (1) ◽  
pp. 111
Author(s):  
HUAN-DI ZHENG ◽  
WEN-YING ZHUANG
Keyword(s):  
New Species ◽  
Dna Sequences ◽  
Internal Transcribed Spacer ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Central China ◽  
Nuclear Ribosomal Dna ◽  
Light Blue ◽  
Ectal Excipulum ◽  
A New Species

A new species, namely Chlorociboria herbicola, is discovered on herbaceous stems in central China. Morphologically, the new fungus is distinctive by the combination of light blue-green apothecia, rectangular cells in ectal excipulum, and elongate-ellipsoidal ascospores with rounded ends. Phylogenetic analyses of the internal transcribed spacer and large subunit of nuclear ribosomal DNA sequences confirm its ascription in Chlorociboria and distinction from the known species of the genus.

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