Molecular dynamics simulations of highly charged green fluorescent proteins

Fluorescent Proteins ◽

Dynamics Simulations ◽

Green Fluorescent Proteins: Empirical Force Field for the Neutral and Deprotonated Forms of the Chromophore. Molecular Dynamics Simulations of the Wild Type and S65T Mutant

The Journal of Physical Chemistry B ◽

10.1021/jp014476w ◽

2002 ◽

Vol 106 (24) ◽

pp. 6310-6321 ◽

Cited By ~ 78

Author(s):

Nathalie Reuter ◽

Hai Lin ◽

Walter Thiel

Keyword(s):

Molecular Dynamics ◽

Force Field ◽

Fluorescent Proteins ◽

Wild Type ◽

Empirical Force Field ◽

Dynamics Simulations ◽

Molecular dynamics simulations of enhanced green fluorescent proteins: Effects of F64L, S65T and T203Y mutations on the ground-state proton equilibria

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.10335 ◽

2003 ◽

Vol 51 (3) ◽

pp. 378-389 ◽

Cited By ~ 31

Author(s):

R. Nifosì ◽

V. Tozzini

Keyword(s):

Molecular Dynamics ◽

Ground State ◽

Fluorescent Proteins ◽

Dynamics Simulations ◽

Ab Initio Molecular Dynamics of the Green Fluorescent Protein (GFP) Chromophore: An Insight into the Photoinduced Dynamics of Green Fluorescent Proteins

The Journal of Physical Chemistry B ◽

10.1021/jp010052q ◽

2001 ◽

Vol 105 (24) ◽

pp. 5797-5803 ◽

Cited By ~ 39

Author(s):

Valentina Tozzini ◽

Riccardo Nifosì

Keyword(s):

Molecular Dynamics ◽

Green Fluorescent Protein ◽

Ab Initio ◽

Fluorescent Protein ◽

Fluorescent Proteins ◽

Ab Initio Molecular Dynamics ◽

Gfp Chromophore ◽

Green Fluorescent ◽

Insight Into

Analysis of Interactions between Green Fluorescent Protein and Silicon Substrates Using Molecular Dynamics Simulations

Japanese Journal of Applied Physics ◽

10.1143/jjap.44.8210 ◽

2005 ◽

Vol 44 (11) ◽

pp. 8210-8215 ◽

Cited By ~ 12

Author(s):

Katsuhiko Nishiyama ◽

Takanobu Watanabe ◽

Tadatsugu Hoshino ◽

Iwao Ohdomari

Keyword(s):

Molecular Dynamics ◽

Green Fluorescent Protein ◽

Fluorescent Protein ◽

Silicon Substrates ◽

Dynamics Simulations ◽

Structural Determinants of Improved Fluorescence in a Family of Bacteriophytochrome-Based Infrared Fluorescent Proteins: Insights from Continuum Electrostatic Calculations and Molecular Dynamics Simulations

Biochemistry ◽

10.1021/acs.biochem.6b00295 ◽

2016 ◽

Vol 55 (31) ◽

pp. 4263-4274 ◽

Cited By ~ 15

Author(s):

Mikolaj Feliks ◽

Céline Lafaye ◽

Xiaokun Shu ◽

Antoine Royant ◽

Martin Field

Keyword(s):

Molecular Dynamics ◽

Fluorescent Proteins ◽

Structural Determinants ◽

Dynamics Simulations ◽

Electrostatic Calculations

Using Molecular Dynamics Simulations to Understand IR Spectroscopy Results in Green Fluorescent Protein

Biophysical Journal ◽

10.1016/j.bpj.2019.11.907 ◽

2020 ◽

Vol 118 (3) ◽

pp. 143a-144a

Author(s):

Nia Huggins ◽

Tracey Ng ◽

Nicole Cruz ◽

Scott H. Brewer ◽

Christine M. Phillips-Piro ◽

...

Keyword(s):

Molecular Dynamics ◽

Green Fluorescent Protein ◽

Ir Spectroscopy ◽

Fluorescent Protein ◽

Dynamics Simulations ◽

Structure of phosphorus-selenium glasses: results from ab initio molecular dynamics simulations

Molecular Physics ◽

10.1080/002689700162045 ◽

2000 ◽

Vol 98 (11) ◽

pp. 701-707

Author(s):

Alessandro Sergi, Mauro Ferrario, Francesco Bu

Keyword(s):

Molecular Dynamics ◽

Ab Initio ◽

Ab Initio Molecular Dynamics ◽

Dynamics Simulations

Tracer diffusion in perfectly aligned liquid crystalline phases Kinetic theory and molecular dynamics simulations

Molecular Physics ◽

10.1080/00268979709482789 ◽

1997 ◽

Vol 91 (6) ◽

pp. 993-1003 ◽

Cited By ~ 1

Author(s):

ANJALI KHARE ◽

DAVID KOFKE ◽

GLENN EVANS

Keyword(s):

Molecular Dynamics ◽

Kinetic Theory ◽

Liquid Crystalline ◽

Tracer Diffusion ◽

Crystalline Phases ◽

Liquid Crystalline Phases ◽

Dynamics Simulations

ERRATUM Molecular dynamics simulations of liquid crystal phases using atomistic potentials

Molecular Physics ◽

10.1080/002689798167430 ◽

1998 ◽

Vol 95 (1) ◽

pp. 121-121

Author(s):

CARL MCBRIDE MARK R. WILSON JUDITH A. K.

Keyword(s):

Molecular Dynamics ◽

Liquid Crystal ◽

Crystal Phases ◽

Dynamics Simulations ◽

Liquid Crystal Phases

Nonequilibrium Molecular Dynamics Simulations of 3-Methylhexane: The Effect of Inter- and Intramolecular Potential Models on Simulated Viscosity

The Journal of Physical Chemistry A ◽

10.1021/jp971476g ◽

1997 ◽

Vol 101 (27) ◽

pp. 5026-5026

Author(s):

Maija Lahtela ◽

Tapani A. Pakkanen ◽

Richard L. Rowley

Keyword(s):

Molecular Dynamics ◽

Nonequilibrium Molecular Dynamics ◽

Potential Models ◽

Dynamics Simulations