Microbial Diversity and Community Structure in Alpine Stream Soil

2020 ◽  
pp. 1-10
Author(s):  
Atta Rasool ◽  
Salar Ali ◽  
Waqar Ali ◽  
Gaber E. Eldesoky ◽  
Muhammad Shafeeque ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Diversity ◽  
Alpine Stream

scholarly journals Stochastic Assembly Leads to Alternative Communities with Distinct Functions in a Bioreactor Microbial Community

mBio ◽  
2013 ◽  
Vol 4 (2) ◽  
Author(s):  
Jizhong Zhou ◽  
Wenzong Liu ◽  
Ye Deng ◽  
Yi-Huei Jiang ◽  
Kai Xue ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Microbial Diversity ◽  
Microbial Community Structure ◽  
Community Assembly ◽  
Ecosystem Functioning ◽  
Dominant Role ◽  
Microbial Biodiversity ◽  
Stochastic Assembly

ABSTRACTThe processes and mechanisms of community assembly and its relationships to community functioning are central issues in ecology. Both deterministic and stochastic factors play important roles in shaping community composition and structure, but the connection between community assembly and ecosystem functioning remains elusive, especially in microbial communities. Here, we used microbial electrolysis cell reactors as a model system to examine the roles of stochastic assembly in determining microbial community structure and functions. Under identical environmental conditions with the same source community, ecological drift (i.e., initial stochastic colonization) and subsequent biotic interactions created dramatically different communities with little overlap among 14 identical reactors, indicating that stochastic assembly played dominant roles in determining microbial community structure. Neutral community modeling analysis revealed that deterministic factors also played significant roles in shaping microbial community structure in these reactors. Most importantly, the newly formed communities differed substantially in community functions (e.g., H2production), which showed strong linkages to community structure. This study is the first to demonstrate that stochastic assembly plays a dominant role in determining not only community structure but also ecosystem functions. Elucidating the links among community assembly, biodiversity, and ecosystem functioning is critical to understanding ecosystem functioning, biodiversity preservation, and ecosystem management.IMPORTANCEMicroorganisms are the most diverse group of life known on earth. Although it is well documented that microbial natural biodiversity is extremely high, it is not clear why such high diversity is generated and maintained. Numerous studies have established the roles of niche-based deterministic factors (e.g., pH, temperature, and salt) in shaping microbial biodiversity, the importance of stochastic processes in generating microbial biodiversity is rarely appreciated. Moreover, while microorganisms mediate many ecosystem processes, the relationship between microbial diversity and ecosystem functioning remains largely elusive. Using a well-controlled laboratory system, this study provides empirical support for the dominant role of stochastic assembly in creating variations of microbial diversity and the first explicit evidence for the critical role of community assembly in influencing ecosystem functioning. The results presented in this study represent important contributions to the understanding of the mechanisms, especially stochastic processes, involved in shaping microbial biodiversity.

Effects of organochlorines on microbial diversity and community structure in Phragmites australis rhizosphere

2014 ◽  
Vol 98 (9) ◽  
pp. 4257-4266 ◽  
Author(s):  
Angélique San Miguel ◽  
Julien Roy ◽  
Jérôme Gury ◽  
Armelle Monier ◽  
Eric Coissac ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Diversity ◽  
Phragmites Australis

scholarly journals Experimental evidence that predator range expansion modifies alpine stream community structure

2015 ◽  
Vol 34 (1) ◽  
pp. 66-80 ◽  
Author(s):  
K. Khamis ◽  
L. E. Brown ◽  
D. M. Hannah ◽  
A. M. Milner
Keyword(s):  
Community Structure ◽  
Experimental Evidence ◽  
Range Expansion ◽  
Stream Community ◽  
Alpine Stream

scholarly journals Microbial Diversity in Engineered Haloalkaline Environments Shaped by Shared Geochemical Drivers Observed in Natural Analogues

2015 ◽  
Vol 81 (15) ◽  
pp. 5026-5036 ◽  
Author(s):  
Talitha C. Santini ◽  
Lesley A. Warren ◽  
Kathryn E. Kendra
Keyword(s):  
Community Structure ◽  
Microbial Diversity ◽  
Fungal Community ◽  
Soda Lakes ◽  
Bauxite Residue ◽  
Environmental Parameters ◽  
Total Alkalinity ◽  
Content Type ◽  
Natural Analogues ◽  
Bauxite Residues

ABSTRACTMicrobial communities in engineered terrestrial haloalkaline environments have been poorly characterized relative to their natural counterparts and are geologically recent in formation, offering opportunities to explore microbial diversity and assembly in dynamic, geochemically comparable contexts. In this study, the microbial community structure and geochemical characteristics of three geographically dispersed bauxite residue environments along a remediation gradient were assessed and subsequently compared with other engineered and natural haloalkaline systems. In bauxite residues, bacterial communities were similar at the phylum level (dominated byProteobacteriaandFirmicutes) to those found in soda lakes, oil sands tailings, and nuclear wastes; however, they differed at lower taxonomic levels, with only 23% of operational taxonomic units (OTUs) shared with other haloalkaline environments. Although being less diverse than natural analogues, bauxite residue harbored substantial novel bacterial taxa, with 90% of OTUs nonmatchable to cultured representative sequences. Fungal communities were dominated byAscomycotaandBasidiomycota, consistent with previous studies of hypersaline environments, and also harbored substantial novel (73% of OTUs) taxa. In bauxite residues, community structure was clearly linked to geochemical and physical environmental parameters, with 84% of variation in bacterial and 73% of variation in fungal community structures explained by environmental parameters. The major driver of bacterial community structure (salinity) was consistent across natural and engineered environments; however, drivers differed for fungal community structure between natural (pH) and engineered (total alkalinity) environments. This study demonstrates that both engineered and natural terrestrial haloalkaline environments host substantial repositories of microbial diversity, which are strongly shaped by geochemical drivers.

scholarly journals Exploration of Microbial Diversity and Community Structure of Lonar Lake: The Only Hypersaline Meteorite Crater Lake within Basalt Rock

2016 ◽  
Vol 6 ◽  
Author(s):  
Dhiraj Paul ◽  
Shreyas V. Kumbhare ◽  
Snehit S. Mhatre ◽  
Somak P. Chowdhury ◽  
Sudarshan A. Shetty ◽  
...  
Keyword(s):  
Community Structure ◽  
Microbial Diversity ◽  
Crater Lake ◽  
Lonar Lake ◽  
Meteorite Crater ◽  
Basalt Rock

scholarly journals Assessment of microbial communities in Nakivubo wetland and its catchment areas in Lake Victoria Basin, Uganda

2020 ◽  
Author(s):  
Bernard N. Kanoi ◽  
Maribet Gamboa ◽  
Doris Ngonzi ◽  
Thomas G. Egwang
Keyword(s):  
Community Structure ◽  
Microbial Community ◽  
Microbial Diversity ◽  
Microbial Community Structure ◽  
Lake Victoria ◽  
Rrna Gene ◽  
Lake Victoria Basin ◽  
Structure Changes ◽  
Catchment Areas ◽  
Polluted Sites

AbstractMicrobial community structure changes are key in detecting and characterizing the impacts of anthropogenic activities on aquatic ecosystems. Here, we evaluated the effect of river pollution of industrial and urban sites on the microbial community composition and distribution in the Nakivubo wetland and its catchment areas in Lake Victoria basin, Uganda. Samples were collected from two industrial and one urban polluted sites and the microbial diversity was analyzed based on a 16S rRNA gene clone library. Differences in microbial diversity and community structure were observed at different sampling points. Bacteria associated with bioremediation were found in sites receiving industrial waste, while a low proportion of important human-pathogenic bacteria were seen in urban polluted sites. While Escherichia spp. was the most dominant genus of bacteria for all sites, three unique bacteria, Bacillus sp., Pseudomonas sp., Thermomonas sp., which have been reported to transform contaminants such as heavy metals and hydrocarbons (such as oils) by their metabolic pathways were also identified. Our results may serve as a basis for further studies assessing microbial community structure changes among polluted sites at Nakivubo Water Channel for management and monitoring. The diversity of natural microbial consortia could also be a rich bioprospecting resource for novel industrial enzymes, medicinal and bioactive compounds.

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