A multiplex RT-PCR method for the simultaneous detection of Narcissus yellow stripe virus, Narcissus latent virus and Narcissus mosaic virus

2019 ◽  
Vol 41 (1) ◽  
pp. 115-123 ◽  
Author(s):  
Yipeng He ◽  
Fangluan Gao ◽  
Jianguo Shen ◽  
Furong Liao ◽  
Xihong Chen ◽  
...  
Author(s):  
Katarzyna Trzmiel

AbstractBrome mosaic virus (BMV) and cocksfoot mottle virus (CfMV) are pathogens of grass species including all economically important cereals. Both viruses have been identified in Poland therefore they create a potential risk to cereal crops. In this study, a duplex—reverse transcription—polymerase chain reaction (duplex-RT-PCR) was developed and optimized for simultaneous detection and differentiation of BMV and CfMV as well as for confirmation of their co-infection. Selected primers CfMVdiag-F/CfMVdiag-R and BMV2-F/BMV2-R amplified 390 bp and 798 bp RT-PCR products within coat protein (CP) region of CfMV and replicase gene of BMV, respectively. Duplex-RT-PCR was successfully applied for the detection of CfMV-P1 and different Polish BMV isolates. Moreover, one sample was found to be co-infected with BMV-ML1 and CfMV-ML1 isolates. The specificity of generated RT-PCR products was verified by sequencing. Duplex-RT-PCR, like conventional RT-PCR, was able to detect two viruses occurring in plant tissues in very low concentration (as low as 4.5 pg/µL of total RNA). In contrast to existing methods, newly developed technique offers a significant time and cost-saving advantage. In conclusion, duplex-RT-PCR is a useful tool which can be implemented by phytosanitary services to rapid detection and differentiation of BMV and CfMV.


2016 ◽  
Vol 26 (8) ◽  
pp. 1398-1403 ◽  
Author(s):  
Mi-Ju Kim ◽  
Shin-Young Lee ◽  
Hyun-Joong Kim ◽  
Jeong Su Lee ◽  
In Sun Joo ◽  
...  

PLoS ONE ◽  
2019 ◽  
Vol 14 (8) ◽  
pp. e0219750 ◽  
Author(s):  
Xueming Chen ◽  
Yuhuan Chen ◽  
Chungguo Liu ◽  
Xiaojun Li ◽  
Hongyu Liu ◽  
...  

2021 ◽  
Author(s):  
Xiyu Zhang ◽  
Zhihui Tang ◽  
Haoyan Niu ◽  
Liping Yan ◽  
suquan song

Abstract The feline calicivirus (FCV), feline herspesvirus 1 (FHV-1) and feline panleukemia virus (FPV) are heavily threaten the health of cats. In this study, a triplex TaqMan real-time polymerase chain reaction (RT-PCR) assay (triplex assay) was developed to detect these viruses. The optimized concentration of primers was 0.5 µM of each, probes concentration was 0.1 µM for FCV and FHV-1, 0.05 µM for FPV. The annealing temperature was set at 54 ℃. The triplex RT-PCR assay was carefully validated. The detection limit for FPV, FCV, and FHV-1 was 5×101 copies/µL, which showed a 10-100-fold increase in the sensitivity compared with the conventional PCR. The coefficients of variation (CV) of the intra-assay variability of the test were < 1.86%, and that of inter-assay was < 3.19%, indicating excellent repeatability and reproducibility of the triplex assay. Additionally, the assay has perfect specificity. In a pilot study, samples from 48 cats were analyzed using the triplex RT-PCR method and the commercial kits, and further confirmed by sequencing. The positive rates for the samples analyzed with these two methods were 70.83% and 62.5%, respectively, which demonstrated that the developed method was more accurate than the commercial kits in clinical diagnosis.


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