Cross-talk between allosteric and orthosteric binding sites of γ-amino butyric acid type A receptors (GABAA-Rs): A computational study revealing the structural basis of selectivity

2019 ◽  
Vol 37 (12) ◽  
pp. 3065-3080 ◽  
Author(s):  
Pavan V. Payghan ◽  
Sudipendra Nath Roy ◽  
Dhananjay Bhattacharyya ◽  
Nanda Ghoshal
2018 ◽  
Vol 129 (5) ◽  
pp. 959-969 ◽  
Author(s):  
Megan McGrath ◽  
Zhiyi Yu ◽  
Selwyn S. Jayakar ◽  
Celena Ma ◽  
Mansi Tolia ◽  
...  

Abstract Editor’s Perspective What We Already Know about This Topic What This Article Tells Us That Is New Background Naphthalene-etomidate, an etomidate analog containing a bulky phenyl ring substituent group, possesses very low γ-aminobutyric acid type A (GABAA) receptor efficacy and acts as an anesthetic-selective competitive antagonist. Using etomidate analogs containing phenyl ring substituents groups that range in volume, we tested the hypothesis that this unusual pharmacology is caused by steric hindrance that reduces binding to the receptor’s open state. Methods The positive modulatory potencies and efficacies of etomidate and phenyl ring–substituted etomidate analogs were electrophysiology defined in oocyte-expressed α1β3γ2L GABAA receptors. Their binding affinities to the GABAA receptor’s two classes of transmembrane anesthetic binding sites were assessed from their abilities to inhibit receptor labeling by the site-selective photolabels 3[H]azi-etomidate and tritiated R-5-allyl-1-methyl-5-(m-trifluoromethyl-diazirynylphenyl) barbituric acid. Results The positive modulatory activities of etomidate and phenyl ring–substituted etomidate analogs progressively decreased with substituent group volume, reflecting significant decreases in both potency (P = 0.005) and efficacy (P < 0.0001). Affinity for the GABAA receptor’s two β+ − α– anesthetic binding sites similarly decreased with substituent group volume (P = 0.003), whereas affinity for the receptor’s α+ – β–/γ+ – β– sites did not (P = 0.804). Introduction of the N265M mutation, which is located at the β+ − α– binding sites and renders GABAA receptors etomidate-insensitive, completely abolished positive modulation by naphthalene-etomidate. Conclusions Steric hindrance selectively reduces phenyl ring–substituted etomidate analog binding affinity to the two β+ − α– anesthetic binding sites on the GABAA receptor’s open state, suggesting that the binding pocket where etomidate’s phenyl ring lies becomes smaller as the receptor isomerizes from closed to open.


2017 ◽  
Vol 36 (15) ◽  
pp. 3926-3937 ◽  
Author(s):  
Shanshan Wang ◽  
Qingzhu Liu ◽  
Xi Li ◽  
Xueyu Zhao ◽  
Ling Qiu ◽  
...  

2016 ◽  
Vol 291 (51) ◽  
pp. 26529-26539 ◽  
Author(s):  
David C. Chiara ◽  
Youssef Jounaidi ◽  
Xiaojuan Zhou ◽  
Pavel Y. Savechenkov ◽  
Karol S. Bruzik ◽  
...  

2014 ◽  
Vol 289 (40) ◽  
pp. 27456-27468 ◽  
Author(s):  
Selwyn S. Jayakar ◽  
Xiaojuan Zhou ◽  
David C. Chiara ◽  
Zuzana Dostalova ◽  
Pavel Y. Savechenkov ◽  
...  

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