scholarly journals Completion of the gut microbial epi-bile acid pathway

Gut Microbes ◽  
2021 ◽  
Vol 13 (1) ◽  
pp. 1-20
Author(s):  
Heidi L. Doden ◽  
Patricia G. Wolf ◽  
H. Rex Gaskins ◽  
Karthik Anantharaman ◽  
João M. P. Alves ◽  
...  
Keyword(s):  
2018 ◽  
Vol 84 (7) ◽  
Author(s):  
Sean M. Mythen ◽  
Saravanan Devendran ◽  
Celia Méndez-García ◽  
Isaac Cann ◽  
Jason M. Ridlon

ABSTRACTGut metagenomic sequences provide a rich source of microbial genes, the majority of which are annotated by homology or unknown. Genes and gene pathways that encode enzymes catalyzing biotransformation of host bile acids are important to identify in gut metagenomic sequences due to the importance of bile acids in gut microbiome structure and host physiology. Hydroxysteroid dehydrogenases (HSDHs) are pyridine nucleotide-dependent enzymes with stereospecificity and regiospecificity for bile acid and steroid hydroxyl groups. HSDHs have been identified in several protein families, including medium-chain and short-chain dehydrogenase/reductase families as well as the aldo-keto reductase family. These protein families are large and contain diverse functionalities, making prediction of HSDH-encoding genes difficult and necessitating biochemical characterization. We located a gene cluster inEggerthellasp. CAG:298 predicted to encode three HSDHs (CDD59473, CDD59474, and CDD59475) and synthesized the genes for heterologous expression inEscherichia coli. We then screened bile acid substrates against the purified recombinant enzymes. CDD59475 is a novel 12α-HSDH, and we determined that CDD59474 (3α-HSDH) and CDD59473 (3β-HSDH) constitute novel enzymes in an iso-bile acid pathway. Phylogenetic analysis of these HSDHs with other gut bacterial HSDHs and closest homologues in the database revealed predictable clustering of HSDHs by function and identified several likely HSDH sequences from bacteria isolated or sequenced from diverse mammalian and avian gut samples.IMPORTANCEBacterial HSDHs have the potential to significantly alter the physicochemical properties of bile acids, with implications for increased/decreased toxicity for gut bacteria and the host. The generation of oxo-bile acids is known to inhibit host enzymes involved in glucocorticoid metabolism and may alter signaling through nuclear receptors such as farnesoid X receptor and G-protein-coupled receptor TGR5. Biochemical or similar approaches are required to fill in many gaps in our ability to link a particular enzymatic function with a nucleic acid or amino acid sequence. In this regard, we have identified a novel 12α-HSDH and a novel set of genes encoding an iso-bile acid pathway (3α-HSDH and 3β-HSDH) involved in epimerization and detoxification of harmful secondary bile acids.


2019 ◽  
pp. g3.200880.2018
Author(s):  
Megan L. Civitello ◽  
Robert Denton ◽  
Michael A. Zasloff ◽  
John H. Malone

1989 ◽  
Vol 262 (1) ◽  
pp. 341-348 ◽  
Author(s):  
H M Princen ◽  
P Meijer ◽  
B Hofstee

To study the effect of steroid hormones on bile acid synthesis by cultured rat hepatocytes, cells were incubated with various amounts of these compounds during 72 h and conversion of [4-14C]cholesterol into bile acids was measured. Bile acid synthesis was stimulated in a dose-dependent way by glucocorticoids, but not by sex steroid hormones, pregnenolone or the mineralocorticoid aldosterone in concentrations up to 10 microM. Dexamethasone proved to be the most efficacious inducer, giving 3-fold and 7-fold increases in bile acid synthesis during the second and third 24 h incubation periods respectively, at a concentration of 50 nM. Mass production of bile acids as measured by g.l.c. during the second day of culture (28-52 h) was 2.2-fold enhanced by 1 microM-dexamethasone. No change in the ratio of bile acids produced was observed during this period in the presence of dexamethasone. Conversion of [4-14C]7 alpha-hydroxycholesterol, an intermediate of the bile acid pathway, to bile acids was not affected by dexamethasone. Measurement of cholesterol 7 alpha-hydroxylase activity in homogenates of hepatocytes, incubated with 1 microM-dexamethasone, showed 10-fold and 90-fold increases after 48 and 72 h respectively, as compared with control cells. As with bile acid synthesis from [14C]cholesterol, no change in enzyme activity was found in hepatocytes cultured in the presence of 10 microM steroid hormones other than glucocorticoids. Addition of inhibitors of protein and mRNA synthesis lowered bile acid production and cholesterol 7 alpha-hydroxylase activity and prevented the rise of both parameters with dexamethasone, suggesting regulation at the mRNA level. We conclude that glucocorticoids regulate bile acid synthesis in rat hepatocytes by induction of enzyme activity of cholesterol 7 alpha-hydroxylase.


2015 ◽  
Vol 8 (5) ◽  
pp. 736-745 ◽  
Author(s):  
Olga V. Fedorova ◽  
Valentina I. Zernetkina ◽  
Victoria Y. Shilova ◽  
Yulia N. Grigorova ◽  
Ondrej Juhasz ◽  
...  

2016 ◽  
Vol 81 (11) ◽  
pp. H2841-H2848 ◽  
Author(s):  
Dongyan Shao ◽  
Yilin Wang ◽  
Qingsheng Huang ◽  
Junling Shi ◽  
Hui Yang ◽  
...  

2019 ◽  
Vol 33 (S1) ◽  
Author(s):  
Lucy Zheng ◽  
Yulia Grigorova ◽  
Kellybeth Ramirez ◽  
Valentina Zernetikina ◽  
Wen Wei ◽  
...  

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