High-throughput crystallographic data collection at synchrotrons

Author(s):  
Stephen R. Wasserman ◽  
David W. Smith ◽  
Kevin L. D'Amico ◽  
John W. Koss ◽  
Laura L. Morisco ◽  
...  
Author(s):  
Aaron D. Finke ◽  
Ezequiel Panepucci ◽  
Clemens Vonrhein ◽  
Meitian Wang ◽  
Gérard Bricogne ◽  
...  

Plant Methods ◽  
2019 ◽  
Vol 15 (1) ◽  
Author(s):  
Austin A. Dobbels ◽  
Aaron J. Lorenz

In the original article [1], under the subheading “Image data processing”, last paragraph, last sentence that reads as “The least …… data collection” was incorrectly published. The correct sentence should read as “Least-significant differences (P < 0.20) were calculated for all 36 trials on both ground-based and UAS-image based scores for both dates of data collection.” The original article has been corrected.


Metabolomics ◽  
2013 ◽  
Vol 9 (3) ◽  
pp. 558-563 ◽  
Author(s):  
Lawrence J. Clos ◽  
M. Fransisca Jofre ◽  
James J. Ellinger ◽  
William M. Westler ◽  
John L. Markley

2004 ◽  
Vol 37 (3) ◽  
pp. 399-409 ◽  
Author(s):  
Nicholas K. Sauter ◽  
Ralf W. Grosse-Kunstleve ◽  
Paul D. Adams

Improved methods for indexing diffraction patterns from macromolecular crystals are presented. The novel procedures include a more robust way to verify the position of the incident X-ray beam on the detector, an algorithm to verify that the deduced lattice basis is consistent with the observations, and an alternative approach to identify the metric symmetry of the lattice. These methods help to correct failures commonly experienced during indexing, and increase the overall success rate of the process. Rapid indexing, without the need for visual inspection, will play an important role as beamlines at synchrotron sources prepare for high-throughput automation.


2006 ◽  
Vol 62 (10) ◽  
pp. 1162-1169 ◽  
Author(s):  
A. Beteva ◽  
F. Cipriani ◽  
S. Cusack ◽  
S. Delageniere ◽  
J. Gabadinho ◽  
...  

2008 ◽  
Vol 412 (2) ◽  
pp. 257-264 ◽  
Author(s):  
Hans-Petter Hersleth ◽  
Ya-Wen Hsiao ◽  
Ulf Ryde ◽  
Carl Henrik Görbitz ◽  
K. Kristoffer Andersson

Myoglobin has the ability to react with hydrogen peroxide, generating high-valent complexes similar to peroxidases (compounds I and II), and in the presence of excess hydrogen peroxide a third intermediate, compound III, with an oxymyoglobin-type structure is generated from compound II. The compound III is, however, easily one-electron reduced to peroxymyoglobin by synchrotron radiation during crystallographic data collection. We have generated and solved the 1.30 Å (1 Å=0.1 nm) resolution crystal structure of the peroxymyoglobin intermediate, which is isoelectric to compound 0 and has a Fe–O distance of 1.8 Å and O–O bond of 1.3 Å in accordance with a FeII–O–O− (or FeIII–O–O2−) structure. The generation of the peroxy intermediate through reduction of compound III by X-rays shows the importance of using single-crystal microspectrophotometry when doing crystallography on metalloproteins. After having collected crystallographic data on a peroxy-generated myoglobin crystal, we were able (by a short annealing) to break the O–O bond leading to formation of compound II. These results indicate that the cryoradiolytic-generated peroxymyoglobin is biologically relevant through its conversion into compound II upon heating. Additionally, we have observed that the Xe1 site is occupied by a water molecule, which might be the leaving group in the compound II to compound III reaction.


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