scholarly journals PreDREM: a database of predicted DNA regulatory motifs from 349 human cell and tissue samples

Database ◽  
2015 ◽  
Vol 2015 ◽  
Author(s):  
Yiyu Zheng ◽  
Xiaoman Li ◽  
Haiyan Hu
Keyword(s):  
Human Cell ◽  
Tissue Samples ◽  
Regulatory Motifs ◽  
Dna Regulatory Motifs

Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation

1998 ◽  
Vol 16 (10) ◽  
pp. 939-945 ◽  
Author(s):  
Frederick P. Roth ◽  
Jason D. Hughes ◽  
Preston W. Estep ◽  
George M. Church
Keyword(s):  
Whole Genome ◽  
Noncoding Sequences ◽  
Regulatory Motifs ◽  
Mrna Quantitation ◽  
Dna Regulatory Motifs

Identification of DNA Regulatory Motifs and Regulators by Integrating Gene Expression and Sequence Data

2009 ◽  
pp. 333-346
Author(s):  
Deukwoo Kwon ◽  
Sinae Kim ◽  
David B. Dahl ◽  
Michael Swartz ◽  
Mahlet G. Tadesse ◽  
...  
Keyword(s):  
Gene Expression ◽  
Sequence Data ◽  
Regulatory Motifs ◽  
Dna Regulatory Motifs

Natural variants of the HIV-1 long terminal repeat: Analysis of promoters with duplicated DNA regulatory motifs

Virology ◽  
1992 ◽  
Vol 191 (2) ◽  
pp. 968-972 ◽  
Author(s):  
Sabine E.C. Koken ◽  
Jeroen L.B. Van Wamel ◽  
Jaap Goudsmit ◽  
Ben Berkhout ◽  
Jan L.M.C. Geelent
Keyword(s):  
Long Terminal Repeat ◽  
Terminal Repeat ◽  
Regulatory Motifs ◽  
Repeat Analysis ◽  
Natural Variants ◽  
Dna Regulatory Motifs ◽  
Hiv 1

scholarly journals MISCORE: a new scoring function for characterizing DNA regulatory motifs in promoter sequences

2012 ◽  
Vol 6 (Suppl 2) ◽  
pp. S4 ◽  
Author(s):  
Dianhui Wang ◽  
Sarwar Tapan
Keyword(s):  
Scoring Function ◽  
Promoter Sequences ◽  
Regulatory Motifs ◽  
Dna Regulatory Motifs ◽  
New Scoring

scholarly journals Assigning roles to DNA regulatory motifs using comparative genomics

2010 ◽  
Vol 26 (7) ◽  
pp. 860-866 ◽  
Author(s):  
Fabian A. Buske ◽  
Mikael Bodén ◽  
Denis C. Bauer ◽  
Timothy L. Bailey
Keyword(s):  
Comparative Genomics ◽  
Regulatory Motifs ◽  
Dna Regulatory Motifs

scholarly journals Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types

2013 ◽  
Vol 23 (7) ◽  
pp. 1142-1154 ◽  
Author(s):  
J. Ernst ◽  
M. Kellis
Keyword(s):  
Human Cell ◽  
Cell Types ◽  
Chromatin State ◽  
Regulatory Motifs ◽  
State Regulator

scholarly journals Identification of DNA regulatory motifs using Bayesian variable selection

2004 ◽  
Vol 20 (16) ◽  
pp. 2553-2561 ◽  
Author(s):  
M. G. Tadesse ◽  
M. Vannucci ◽  
P. Lio
Keyword(s):  
Variable Selection ◽  
Bayesian Variable Selection ◽  
Regulatory Motifs ◽  
Dna Regulatory Motifs

scholarly journals Finding DNA Regulatory Motifs with Position-dependent Models

2013 ◽  
Vol 2 (2) ◽  
pp. 103-109
Author(s):  
Huihai Wu ◽  
Prudence W.H. Wong ◽  
Mark X. Caddick ◽  
Chris Sibthorp
Keyword(s):  
Regulatory Motifs ◽  
Dna Regulatory Motifs

scholarly journals Discovery of Stress Responsive DNA Regulatory Motifs in Arabidopsis

PLoS ONE ◽  
2012 ◽  
Vol 7 (8) ◽  
pp. e43198 ◽  
Author(s):  
Shisong Ma ◽  
Shawn Bachan ◽  
Matthew Porto ◽  
Hans J. Bohnert ◽  
Michael Snyder ◽  
...  
Keyword(s):  
Regulatory Motifs ◽  
Dna Regulatory Motifs
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