scholarly journals Computational identification of novel peripheral protein‐membrane interactions

2008 ◽  
Vol 22 (S1) ◽  
Author(s):  
Irina Kufareva ◽  
Felician Dancea ◽  
Mahadev Ravi Kiran ◽  
Zinaida Polonskaya ◽  
Michael Overduin ◽  
...  
2020 ◽  
Author(s):  
Sriraksha Srinivasan ◽  
Valeria Zoni ◽  
Stefano Vanni

Peripheral membrane proteins play a major role in numerous biological processes by transiently associating with cellular membranes, often with extreme membrane specificity. Because of the short-lived nature of these interactions,...


Author(s):  
Carolina López ◽  
Alessio Prunotto ◽  
Guillermo Bahr ◽  
Robert A. Bonomo ◽  
Lisandro J. González ◽  
...  

Outer membrane vesicles (OMVs) act as carriers of bacterial products such as plasmids and resistance determinants, including metallo-β-lactamases. The lipidated, membrane-anchored metallo-β-lactamase NDM-1 can be detected in Gram-negative OMVs. The soluble domain of NDM-1 also forms electrostatic interactions with the membrane. Herein, we show that these interactions promote its packaging into OMVs produced by Escherichia coli . We report that favorable electrostatic protein-membrane interactions are also at work in the soluble enzyme IMP-1, while being absent in VIM-2. These interactions correlate with an enhanced incorporation of IMP-1 compared to VIM-2 into OMVs. Disruption of these interactions in NDM-1 and IMP-1 impairs their inclusion into vesicles, confirming their role in defining the protein cargo in OMVs. These results also indicate that packaging of metallo-β-lactamases into vesicles in their active form is a common phenomenon that involves cargo selection based on specific molecular interactions.


2017 ◽  
Vol 1859 (5) ◽  
pp. 852-859 ◽  
Author(s):  
Volodymyr V. Shvadchak ◽  
Oleksandr Kucherak ◽  
Kseniia Afitska ◽  
Dmytro Dziuba ◽  
Dmytro A. Yushchenko

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