scholarly journals Female dietary bias towards large migratory moths in the European free-tailed bat ( Tadarida teniotis )

2016 ◽  
Vol 12 (3) ◽  
pp. 20150988 ◽  
Author(s):  
Vanessa A. Mata ◽  
Francisco Amorim ◽  
Martin F. V. Corley ◽  
Gary F. McCracken ◽  
Hugo Rebelo ◽  
...  
Keyword(s):  
High Throughput ◽  
Resource Use ◽  
Diet Composition ◽  
High Throughput Sequencing ◽  
Food Resource ◽  
Migratory Behaviour ◽  
Molecular Tools ◽  
Autographa Gamma ◽  
Males And Females ◽  
Dietary Variation

In bats, sexual segregation has been described in relation to differential use of roosting and foraging habitats. It is possible that variation may also exist between genders in the use of different prey types. However, until recently this idea was difficult to test owing to poorly resolved taxonomy of dietary studies. Here, we use high-throughput sequencing to describe gender-related variation in diet composition of the European free-tailed bat ( Tadarida teniotis ), while controlling for effects of age and season. We analysed guano pellets collected from 143 individuals mist-netted from April to October 2012 and 2013, in northeast Portugal. Moths (Lepidoptera; mainly Noctuidae and Geometridae) were by far the most frequently recorded prey, occurring in nearly all samples and accounting for 96 out of 115 prey taxa. There were significant dietary differences between males and females, irrespective of age and season. Compared to males, females tended to consume larger moths and more moths of migratory behaviour (e.g. Autographa gamma ). Our study provides the first example of gender-related dietary variation in bats, illustrating the value of novel molecular tools for revealing intraspecific variation in food resource use in bats and other insectivores.

scholarly journals Assessing and Maximizing Cultivated Diversity with Plate-Wash PCR and High Throughput Sequencing

2020 ◽  
Author(s):  
Emily N. Junkins ◽  
Bradley S. Stevenson
Keyword(s):  
High Throughput ◽  
Drug Targets ◽  
High Throughput Sequencing ◽  
Multidrug Resistant ◽  
Molecular Techniques ◽  
Bioactive Metabolites ◽  
Plate Count ◽  
Molecular Tools ◽  
Vast Number ◽  
Sequencing Studies

AbstractMolecular techniques continue to reveal a growing disparity between the immense diversity of microbial life and the small proportion that is in pure culture. The disparity, originally dubbed “the great plate count anomaly” by Staley and Konopka, has become even more vexing given our increased understanding of the importance of microbiomes to a host and the role of microorganisms in the vital biogeochemical functions of our biosphere. Searching for novel antimicrobial drug targets often focuses on screening a broad diversity of microorganisms. If diverse microorganisms are to be screened, they need to be cultivated. Recent innovative research has used molecular techniques to assess the efficacy of cultivation efforts, providing invaluable feedback to cultivation strategies for isolating targeted and/or novel microorganisms. Here, we aimed to determine the efficiency of cultivating representative microorganisms from a non-human, mammalian microbiome, identify those microorganisms, and determine the bioactivity of isolates. Molecular methods indicated that around 57% of the ASVs detected in the original inoculum were cultivated in our experiments, but nearly 53% of the total ASVs that were present in our cultivation experiments were not detected in the original inoculum. In light of our controls, our data suggests that when molecular tools were used to characterize our cultivation efforts, they provided a more complete, albeit more complex, understanding of which organisms were present compared to what was eventually cultivated. Lastly, about 3% of the isolates collected from our cultivation experiments showed inhibitory bioactivity against a multidrug-resistant pathogen panel, further highlighting the importance of informing and directing future cultivation efforts with molecular tools.ImportanceCultivation is the definitive tool to understand a microorganism’s physiology, metabolism, and ecological role(s). Despite continuous efforts to hone this skill, researchers are still observing yet-to-be cultivated organisms through high-throughput sequencing studies. Here, we use the very same tool that highlights biodiversity to assess cultivation efficiency. When applied to drug discovery, where screening a vast number of isolates for bioactive metabolites is common, cultivating redundant organisms is a hindrance. However, we observed that cultivating in combination with molecular tools can expand the observed diversity of an environment and its community, potentially increasing the number of microorganisms to be screened for natural products.

scholarly journals Using Plate-Wash PCR and High-Throughput Sequencing to Measure Cultivated Diversity for Natural Product Discovery Efforts

2021 ◽  
Vol 12 ◽  
Author(s):  
Emily N. Junkins ◽  
Bradley S. Stevenson
Keyword(s):  
Natural Product ◽  
High Throughput ◽  
Drug Targets ◽  
High Throughput Sequencing ◽  
Multidrug Resistant ◽  
Molecular Techniques ◽  
Plate Count ◽  
Molecular Tools ◽  
Microbial Life

Molecular techniques continue to reveal a growing disparity between the immense diversity of microbial life and the small proportion that is in pure culture. The disparity, originally dubbed “the great plate count anomaly” by Staley and Konopka, has become even more vexing given our increased understanding of the importance of microbiomes to a host and the role of microorganisms in the vital biogeochemical functions of our biosphere. Searching for novel antimicrobial drug targets often focuses on screening a broad diversity of microorganisms. If diverse microorganisms are to be screened, they need to be cultivated. Recent innovative research has used molecular techniques to assess the efficacy of cultivation efforts, providing invaluable feedback to cultivation strategies for isolating targeted and/or novel microorganisms. Here, we aimed to determine the efficiency of cultivating representative microorganisms from a non-human, mammalian microbiome, identify those microorganisms, and determine the bioactivity of isolates. Sequence-based data indicated that around 57% of the ASVs detected in the original inoculum were cultivated in our experiments, but nearly 53% of the total ASVs that were present in our cultivation experiments were not detected in the original inoculum. In light of our controls, our data suggests that when molecular tools were used to characterize our cultivation efforts, they provided a more complete and more complex, understanding of which organisms were present compared to what was eventually detected during cultivation. Lastly, about 3% of the isolates collected from our cultivation experiments showed inhibitory bioactivity against an already multidrug-resistant pathogen panel, further highlighting the importance of informing and directing future cultivation efforts with molecular tools.

Patterns of diet composition of a whiptail lizard species conforms to the Shared Preferences Model of interindividual variation in prey consumption

2020 ◽  
Vol 41 (4) ◽  
pp. 535-545
Author(s):  
Djan Zanchi-Silva ◽  
Conrado Galdino ◽  
Diva Borges-Nojosa
Keyword(s):  
Resource Use ◽  
Food Resource ◽  
Interindividual Variation ◽  
Insect Larvae ◽  
Wet Season ◽  
Lizard Species ◽  
Diet Patterns ◽  
Trophic Networks ◽  
Males And Females ◽  
One Year

Abstract We analysed the interindividual variation in diet, patterns of food resource use and topology of the trophic networks of juvenile, male, and female Ameivula ocellifera (Spix, 1825) during one year, covering wet and dry seasons. Using a network-based approach, we evaluated the degree of variation in the diet of individuals, and the degree of nestedness and clustering to identify patterns of resource use and the topology of individuals food webs. We found a high degree of interindividual variation in the diet of juveniles, males, and females during the study period, which seems to be related to nested patterns of resource use of males and females. These results also suggest that males and females seem to have both generalist and specialist individuals, of which the diets of specialists are nested within the diets of generalists. For juveniles, we found evidence of interindividual variation in diet in both seasons, although patterns of food resource partition that may cause it could not be identified. Insect larvae of several groups were the main food resource in all three lizard groups during the wet season, while termites were the dominant food item during the dry season. Our results conform to the Shared Preferences Model where individuals should consume the same top-ranked prey when they are abundant in the environment, replacing it with suboptimal items as preferred ones become scarce.

Feeding ecology of the marsupial Thylamys macrurus (Olfers 1818) (Mammalia, Didelphidae) in woodland patches of Cerrado, central-western Brazil

Mammalia ◽  
2018 ◽  
Vol 83 (1) ◽  
pp. 41-48 ◽  
Author(s):  
Geruza Leal Melo ◽  
Sara Angélica Santos ◽  
Jonas Sponchiado ◽  
Nilton Carlos Cáceres ◽  
Leonardo Guimarães Lessa
Keyword(s):  
Feeding Ecology ◽  
Diet Composition ◽  
Seasonal Pattern ◽  
Dry Season ◽  
Consumption Pattern ◽  
Wet Season ◽  
Faecal Samples ◽  
Males And Females ◽  
Dietary Variation ◽  
Foraging Pattern

Abstract Knowledge about the feeding ecology of didelphid marsupials remains incipient, especially in environments with marked seasonality in resource supply, such as in the Cerrado. We analysed the diet composition of Thylamys macrurus in Cerrado patches in central-western Brazil. We also evaluated seasonal and sexual variation in the species’ diet, as well as if the accumulation of fat in the tail shows a seasonal pattern. We obtained 87 captures of 68 T. macrurus specimens and 29 faecal samples. Six categories of food items (Hymenoptera, Isoptera, Coleoptera, Arachnida, Blattodea and seeds) were identified. Arthropods were recorded in all samples and seeds in 10.3%. The species showed seasonal variation in diet, consuming primarily of arthropods throughout the year but incorporating a higher proportion of fruits during the wet season. Males and females also differed in diet composition; males consumed a wider range of items in the dry season. Although more detailed analyses are still needed to better understand the T. macrurus food consumption pattern, our results indicate a possible relationship between dietary variation and local availability of resources, suggesting an opportunistic foraging pattern. The accumulation of fat in the tail also presents a seasonal pattern, with a larger tail diameter in the dry season.

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