scholarly journals Halanaerobacter jeridensis sp. nov., isolated from a hypersaline lake

2012 ◽  
Vol 62 (Pt_8) ◽  
pp. 1970-1973 ◽  
Author(s):  
M. Mezghani ◽  
D. Alazard ◽  
F. Karray ◽  
J.-L. Cayol ◽  
M. Joseph ◽  
...  

An obligatory anaerobic, moderately halophilic bacterium, designated strain CEJFG43T, was isolated from a sample of sediment collected below the salt crust on the hypersaline El Jerid lake, in southern Tunisia. The cells of this novel strain were Gram-staining-negative, non-sporulating, motile, short rods. They grew in media with 6–30 % (w/v) NaCl (optimum 15 %), at 20–60 °C (optimum 45 °C) and at pH 5.5–9.5 (optimum pH 8.3). The micro-organism fermented glucose, fructose, ribose, raffinose, galactose, mannose, sucrose, maltose, xylose, mannitol, pyruvate and glycerol. The products of glucose fermentation were lactate, ethanol, acetate, H2 and CO2. The genomic G+C DNA content of strain CEJFG43T was 33.3 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain CEJFG43T belonged in the genus Halanaerobacter and was most closely related to Halanaerobacter lacunarum DSM 6640T (95.3 % gene sequence similarity) and Halanaerobacter chitinivorans DSM 9569T (95.3 %). The predominant cellular fatty acids were non-branched (C16 : 0 and C16 : 1). Based on the phylogenetic and phenotypic evidence, strain CEJFG43T represents a novel species in the genus Halanaerobacter for which the name Halanaerobacter jeridensis sp. nov. is proposed. The type strain is CEJFG43T ( = DSM 23230T = JCM 16696T).

2015 ◽  
Vol 65 (Pt_4) ◽  
pp. 1172-1179 ◽  
Author(s):  
Nariman Ammara Addou ◽  
Peter Schumann ◽  
Cathrin Spröer ◽  
Wajdi Ben Hania ◽  
Hocine Hacene ◽  
...  

A novel filamentous, endospore-forming, thermophilic and moderately halophilic bacterium designated strain Nari2AT was isolated from soil collected from an Algerian salt lake, Chott Melghir. The novel isolate was Gram-staining-positive, aerobic, catalase-negative and oxidase-positive. Optimum growth occurred at 50–55 °C, 7–10 % (w/v) NaCl and pH 7–8. The strain exhibited 95.4, 95.4 and 95.2 % 16S rRNA gene sequence similarity to Thalassobacillus devorans G19.1T, Sediminibacillus halophilus EN8dT and Virgibacillus kekensis YIM-kkny16T, respectively. The major menaquinone was MK-7. The polar lipid profile consisted of phosphatidylglycerol, diphosphatidylglycerol, three unknown phosphoglycolipids and two unknown phospholipids. The predominant cellular fatty acids were iso-C15 : 0 and iso-C17 : 0. The DNA G+C content was 41.9 mol%. Based on the phenotypic, chemotaxonomic and phylogenetic data, strain Nari2AT is considered to represent a novel species of a new genus in the family Bacillaceae , order Bacillales , for which the name Melghiribacillus thermohalophilus gen. nov., sp. nov. is proposed. The type strain of Melghiribacillus thermohalophilus is Nari2AT ( = DSM 25894T = CCUG 62543T).


Author(s):  
Auttaporn Booncharoen ◽  
Wonnop Visessanguan ◽  
Nattakorn Kuncharoen ◽  
Supalurk Yiamsombut ◽  
Pannita Santiyanont ◽  
...  

An aerobic, Gram-stain-positive, endospore-forming, rod-shaped and moderately halophilic strain SKP4-6T, was isolated from shrimp paste (Ka-pi) collected from Samut Sakhon Province, Thailand. Phylogenetic analysis revealed that strain SKP4-6T belonged to the genus Halobacillus and was most closely related to Halobacillus salinus JCM 11546T (98.6 %), Halobacillus locisalis KCTC 3788T (98.6 %) and Halobacillus yeomjeoni KCTC 3957T (98.6 %) based on 16S rRNA gene sequence similarity. The digital DNA–DNA hybridization (dDDH) and average nucleotide identity (ANI) values between strain SKP4-6T and its related species were 18.2–19.3 % and 69.84–84.51 %, respectively, which were lower than the threshold recommended for species delineation. The strain grew optimally at 30–40 °C, at pH 7.0 and with 10–15 % (w/v) NaCl. It contained l-Orn–d-Asp in the cell wall peptidoglycan. The DNA G+C content was 44.8 mol%. The major fatty acids were iso-C15 : 0, anteiso-C15 : 0 and anteiso-C17 : 0. The predominant isoprenoid quinone was MK-7. Phosphatidylglycerol and diphosphatidylglycerol were present as major polar lipids. Based on this polyphasic approach, digital DNA–DNA relatedness and ANI values, strain SKP4-6T represents a novel species of the genus Halobacillus , for which the name Halobacillus fulvus sp. nov. is proposed. The type strain is SKP4-6T (=JCM 32624T=TISTR 2595T).


Author(s):  
Lingmin Jiang ◽  
Won Yong Jung ◽  
Zhun Li ◽  
Mi-Kyung Lee ◽  
Seung-Hwan Park ◽  
...  

A Gram-stain-positive, facultatively anaerobic, endospore-forming, rod-shaped strain, AGMB 02131T, which grew at 20–40 °C (optimum 30 °C), pH 3.0–11.0 (optimum pH 4.0) and in the presence of 0–18 % (w/v) NaCl (optimum 10 %), was isolated from a cow faecal sample and identified as a novel strain using a polyphasic taxonomic approach. The phylogenetic analysis based on 16S rRNA gene sequences along with the whole genome (92 core gene sets) revealed that AGMB 02131T formed a group within the genus Peribacillus , and showed the highest sequence similarity with Peribacillus endoradicis DSM 28131T (96.9 %), following by Peribacillus butanolivorans DSM 18926T (96.6 %). The genome of AGMB 02131T comprised 70 contigs, the chromosome length was 4 038 965 bp and it had a 38.5 % DNA G+C content. Digital DNA–DNA hybridization revealed that AGMB 02131T displayed 21.4 % genomic DNA relatedness with the most closely related strain, P. butanolivorans DSM 18926T. AGMB 02131T contains all of the conserved signature indels that are specific for members of the genus Peribacillus . The major cellular fatty acids (>10 %) of AGMB 02131T were C18 : 1ω9c, C18:0 and C16 : 0. The major polar lipids present were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylethanolamine. On the basis of the phenotypic, phylogenetic, genomic and chemotaxonomic features, AGMB 02131T represents a novel species of the genus Peribacillus , for which the name Peribacillus faecalis sp. nov. is proposed. The type strain is AGMB 02131T (=KCTC 43221T=CCTCC AB 2020077T).


2013 ◽  
Vol 63 (Pt_3) ◽  
pp. 844-848 ◽  
Author(s):  
Maryam Bagheri ◽  
Mohammad Ali Amoozegar ◽  
Peter Schumann ◽  
Maryam Didari ◽  
Malihe Mehrshad ◽  
...  

A novel Gram-stain-positive, moderately halophilic bacterium, designated strain G8BT, was isolated from water of the hypersaline lake Aran-Bidgol in Iran and characterized taxonomically using a polyphasic approach. Cells of strain G8BT were rod-shaped, motile and produced oval endospores at a terminal position in swollen sporangia. Strain G8BT was strictly aerobic, catalase-positive and oxidase-negative. The strain was able to grow at NaCl concentrations of 0.5–12.5 % (w/v), with optimum growth occurring at 5–7.5 % (w/v) NaCl. The optimum temperature and pH for growth were 35–40 °C and pH 7.5–8.0, respectively. On the basis of 16S rRNA gene sequence analysis, strain G8BT was shown to belong to the genus Ornithinibacillus within the phylum Firmicutes and showed closest phylogenetic similarity with Ornithinibacillus bavariensis WSBC 24001T (97.6 %). The DNA G+C content of strain G8BT was 36.9 mol%. The major cellular fatty acids of strain G8BT were anteiso-C15 : 0, anteiso-C17 : 0, iso-C15 : 0 and iso-C16 : 0, and its polar lipid pattern consisted of phosphatidylglycerol, diphosphatidylglycerol, four unknown phospholipids and an unknown aminolipid. The isoprenoid quinones were MK-7 (98 %) and MK-8 (2 %). Strain G8BT contained a peptidoglycan of type A4β, l-Orn–d-Asp. All these features confirmed the placement of isolate G8BT within the genus Ornithinibacillus . DNA–DNA hybridization experiments revealed a low level of relatedness (6 %) between strain G8BT and Ornithinibacillus bavariensis DSM 15681T. On the basis of evidence from this study, a novel species of the genus Ornithinibacillus , Ornithinibacillus halophilus sp. nov., is proposed, with strain G8BT ( = IBRC-M 10683T = KCTC 13822T) as the type strain.


2013 ◽  
Vol 63 (Pt_1) ◽  
pp. 345-351 ◽  
Author(s):  
Mohammad Ali Amoozegar ◽  
Maryam Bagheri ◽  
Maryam Didari ◽  
Seyed Abolhassan Shahzedeh Fazeli ◽  
Peter Schumann ◽  
...  

A novel Gram-positive, moderately halophilic bacterium, designated strain X4BT, was isolated from soil around the hypersaline lake Aran-Bidgol in Iran and characterized taxonomically using a polyphasic approach. Cells of strain X4BT were motile rods and formed ellipsoidal endospores at a terminal or subterminal position in swollen sporangia. Strain X4BT was a strictly aerobic bacterium, catalase- and oxidase-positive. The strain was able to grow at NaCl concentrations of 0.5–22.5 % (w/v), with optimum growth occurring at 7.5 % (w/v) NaCl. The optimum temperature and pH for growth were 35 °C and pH 7.0. Analysis of 16S rRNA gene sequence revealed that strain X4BT is a member of the family Bacillaceae , constituting a novel phyletic lineage within this family. Highest sequence similarities were obtained with the 16S rRNA gene sequences of the type strains of Sediminibacillus albus (96.0 %), Paraliobacillus ryukyuensis (95.9 %), Paraliobacillus quinghaiensis (95.8 %) and Sediminibacillus halophilus (95.7 %), respectively. The DNA G+C content of this novel isolate was 35.2 mol%. The major cellular fatty acids of strain X4BT were anteiso-C15 : 0 and anteiso-C17 : 0 and its polar lipid pattern consisted of diphosphatidylglycerol, phosphatidylglycerol, two aminolipids, an aminophospholipid and an unknown phospholipid. The isoprenoid quinones were MK-7 (89 %) and MK-6 (11 %). The peptidoglycan contained meso-diaminopimelic acid as the diagnostic diamino acid. On the basis of 16S rRNA gene sequence analysis in combination with chemotaxonomic and phenotypic data, strain X4BT represents a novel species in a new genus in the family Bacillaceae , order Bacillales for which the name Saliterribacillus persicus gen. nov., sp. nov. is proposed. The type strain of the type species (Saliterribacillus persicus) is X4BT ( = IBRC-M 10629T = KCTC 13827T).


2013 ◽  
Vol 63 (Pt_4) ◽  
pp. 1562-1567 ◽  
Author(s):  
Mohammad Ali Amoozegar ◽  
Ali Makhdoumi-Kakhki ◽  
Mohadaseh Ramezani ◽  
Mahdi Moshtaghi Nikou ◽  
Seyed Abolhassan Shahzadeh Fazeli ◽  
...  

A novel, Gram-staining-negative, non-pigmented, rod-shaped, strictly aerobic, extremely halophilic bacterium, designated strain IA16T, was isolated from the mud of the hypersaline Lake Aran-Bidgol, in Iran. Cells of strain IA16T were not motile. Growth occurred with 2.5–5.2 M NaCl (optimum 3.4 M), at pH 6.0–8.0 (optimum pH 7.0) and at 30–50 °C (optimum 40 °C). Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain IA16T belonged in the family Rhodospirillaceae and that its closest relatives were Rhodovibrio sodomensis DSM 9895T (91.6 % sequence similarity), Rhodovibrio salinarum NCIMB 2243T (91.2 %), Pelagibius litoralis CL-UU02T (88.9 %) and Fodinicurvata sediminis YIM D82T (88.7 %). The novel strain’s major cellular fatty acids were C19 : 0 cyclo ω7c and C18 : 0 and its polar lipid profile comprised phosphatidylglycerol, diphosphatidylglycerol, four unidentified phospholipids, three unidentified aminolipids and two other unidentified lipids. The cells of strain IA16T contained the ubiquinone Q-10. The G+C content of the novel strain’s genomic DNA was 67.0 mol%. The physiological, biochemical and phylogenetic differences between strain IA16T and other previously described taxa indicate that the strain represents a novel species in a new genus within the family Rhodospirillaceae , for which the name Limimonas halophila gen. nov., sp. nov. is proposed. The type strain of Limimonas halophila is IA16T ( = IBRC-M 10018T  = DSM 25584T).


2014 ◽  
Vol 64 (Pt_6) ◽  
pp. 1964-1969 ◽  
Author(s):  
Mohammad Ali Amoozegar ◽  
Maryam Bagheri ◽  
Ali Makhdoumi-Kakhki ◽  
Maryam Didari ◽  
Peter Schumann ◽  
...  

A novel Gram-staining-positive, moderately halophilic bacterium, designated strain A76T, was isolated from a brine sample of the hypersaline lake Aran-Bidgol in Iran. Cells were strictly aerobic, coccus-shaped, non-motile, non-sporulating, and catalase- and oxidase-positive. Strain A76T grew between pH 7.0 and 10.0 (optimal growth at pH 8.0), between 20 and 45 °C (optimal growth at 35 °C) and at salinities of 0.5 to 12.5 % (w/v) NaCl (optimal growth at 7.5 %, w/v, NaCl). On the basis of 16S rRNA gene sequence analysis, strain A76T was shown to belong to the phylum Firmicutes with sequence similarities of 94.1, 93.1 and 91.1 %, to the type species of the genera Jeotgalicoccus , Salinicoccus and Nosocomiicoccus , respectively. The DNA G+C content of this new isolate was 38.8 mol%. The major cellular fatty acids of strain A76T were anteiso-C15 : 0 and iso-C15 : 0, and its polar lipid pattern consisted of diphosphatidylglycerol, phosphatidylglycerol, a glycolipid, an unknown lipid and two unknown phospholipids. The isoprenoid quinones were MK-6 (94 %), MK-5 (3 %) and MK-7 (3 %). The amino acid constituents of the cell wall were Lys, Asp, Gly, Glu and Ala. The physiological, biochemical and phylogenetic differences between strain A76T and type strains of taxa with validly published names suggest that this strain represents a novel species in a novel genus within the family Staphylococcaceae , for which the name Aliicoccus persicus gen. nov., sp. nov. is proposed. The type strain of Aliicoccus persicus is strain A76T ( = CECT 8508T = DSM 28306T = IBRC-M 10081T).


2012 ◽  
Vol 62 (Pt_12) ◽  
pp. 2903-2909 ◽  
Author(s):  
Rocío Luque ◽  
Victoria Béjar ◽  
Emilia Quesada ◽  
Fernando Martínez-Checa ◽  
Inmaculada Llamas

A moderately halophilic bacterium (strain RS-16T) was isolated from saline soil in Rambla Salada, a Mediterranean hypersaline rambla in Murcia, south-east Spain. Cells of strain RS-16T were Gram-negative rods, oxidase-negative and motile by peritrichous flagella. Strain RS-16T required NaCl for growth, and grew between 1 % and 30 % (w/v) NaCl (optimum, 5–7.5 %), at temperatures of between 4 °C and 41 °C (optimum, 32–37 °C), and at pH values of between 5 and 10 (optimum, pH 7). Strain RS-16T was chemo-organotrophic and its metabolism was respiratory with oxygen and nitrate as terminal electron acceptors. It produced acids from d-glucose and myo-inositol, accumulated poly-β-hydroxyalkanoate granules and produced cream colonies on MY 7.5 % (w/v). The DNA G+C content of strain RS-16T was 56.2 mol%. A comparison of 16S rRNA gene sequences confirmed the relationship of strain RS-16T to species of the genus Halomonas . The most phylogenetically related species was Halomonas cerina SP4T (97.4 %16S rRNA gene sequence similarity). In DNA–DNA hybridization assays strain RS-16T showed DNA–DNA relatedness values of 62.7±3.09 %, 64.5±1.97 % and 64.7±1.74 % to Halomonas cerina CECT 7282T, Halomonas cerina CECT 7284 and Halomonas cerina CECT 7283, respectively. The major fatty acids of strain RS-16T were C18 : 1ω7c and C16 : 0, and the predominant respiratory lipoquinone was ubiquinone, with nine isoprene units (Q-9). On the basis of these data, strain RS-16T is considered to represent a novel species of the genus Halomonas , for which the name Halomonas ramblicola sp. nov. is proposed. The type strain is RS-16T ( = CECT 7896T = LMG 26647T).


2020 ◽  
Vol 70 (6) ◽  
pp. 3899-3904 ◽  
Author(s):  
Huan Zhang ◽  
Hao Wang ◽  
Lei Cao ◽  
Hao Chen ◽  
Minxiao Wang ◽  
...  

A moderately halophilic bacterium, designated strain KX18D6T, was isolated from the tube of the polychaete Paralvinella hessleri collected from a hydrothermal field located in the Okinawa Trough. Strain KX18D6T was Gram-stain-negative, rod-shaped, facultatively anaerobic, motile, oxidase- and catalase-positive, and grew optimally at 30–35 °C, pH 7.0 and in the presence of 3–5 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain KX18D6T grouped with the members of the genus Salinimonas , including Salinimonas chungwhensis BH030046T (97.7 % sequence similarity), Salinimonas lutimaris DPSR-4T (97.2 %) and Salinimonas sediminis N102T (96.4 %). Genome sequencing of strain KX18D6T revealed a genome size of 4.16 Mb and a DNA G+C content of 47.3 mol%. Genomic average nucleotide identity (orthoANI) values of strain KX18D6T with S. chungwhensis DSM 16280T, S. lutimaris KCTC 23464T and S. sediminis N102T were 76.2, 73.1 and 73.2 %, respectively, while the in silico DNA–DNA hybridization (GGDC) values for strain KX18D6T with these strains were 25.3, 17.7 and 18.0 %, respectively. The major fatty acids were summed feature 3 (C16 : 1 ω7c/C16 : 1 ω6c), C16 : 0 and summed feature 8 (C18 : 1 ω7c/C18 : 1 ω6c). The predominant respiratory quinone was ubiquinone 8, and the predominant polar lipids were phosphatidylethanolamine and phosphatidylglycerol. On the basis of comparative analysis of phylogenetic, phylogenomic, phenotypic and chemotaxonomic characteristics, strain KX18D6T (=KCTC 72464T=MCCC 1K03884T) is clearly distinguishable from the type strains of species of the genus Salinimonas and is considered to represent a novel species of the genus Salinimonas , for which the name Salinimonas iocasae sp. nov. is proposed.


2013 ◽  
Vol 63 (Pt_9) ◽  
pp. 3319-3323 ◽  
Author(s):  
Andrea Balderrama-Subieta ◽  
Daniel Guzmán ◽  
Hiroaki Minegishi ◽  
Akinobu Echigo ◽  
Yasuhiro Shimane ◽  
...  

A Gram-stain-positive, coccoid-shaped, halophilic bacterium, strain SR-1T, was isolated from a salt crystal obtained from a mine located in Tarija, Bolivia. The strain was investigated using a polyphasic approach. The optimum conditions for growth of strain SR-1T were reached at 5 % (w/v) NaCl, pH 7.6 and 37–40 °C. The peptidoglycan contained meso-diaminopimelic acid as the diagnostic diamino acid. The isoprenoid quinone was MK-7. The major cellular fatty acids of strain SR-1T were anteiso-C15 : 0, anteiso-C17 : 0 and iso-C16 : 0. The DNA G+C content of strain SR-1T was 48.6 mol%. Phylogenetic analysis based on 16S rRNA gene sequences showed a close relationship between strain SR-1T and Marinococcus halophilus JCM 2479T (99.7 % 16S rRNA gene sequence similarity), Marinococcus halotolerans KCTC 19045T (99.4 %) and Marinococcus luteus KCTC 13214T (99.8 %). However, strain SR-1T also showed low levels of DNA–DNA relatedness with these reference strains (47, 61 and 58 %, respectively). On the basis of phenotypic differences and DNA–DNA hybridization results, strain SR-1T is considered to represent a novel species of the genus Marinococcus , for which the name Marinococcus tarijensis sp. nov. is proposed. The type strain is SR-1T ( = LMG 26930T = CECT 8130T).


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