scholarly journals Draft genome sequence of a Candidatus Brocadia bacterium enriched from tropical-climate activated sludge

2017 ◽  
Author(s):  
Xianghui Liu ◽  
Krithika Arumugam ◽  
Gayathri Natarajan ◽  
Thomas W. Seviour ◽  
Daniela I. Drautz-Moses ◽  
...  
Keyword(s):  
Nitric Oxide ◽  
Activated Sludge ◽  
Genome Sequence ◽  
Nitrite Reductase ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Anammox Bacterium ◽  
Ribosomal Rnas ◽  
Coding Regions ◽  
Gene Coding

AbstractWe present the draft genome of an anaerobic ammonium-oxidizing (anammox) bacterium, cluster III Candidatus Brocadia, which was enriched in an anammox reactor. A 3.2 Mb genome sequence comprising 168 contigs was assembled, in which 2,765 gene-coding regions, 47 tRNAs, and 5S, 16S and 23S ribosomal RNAs were annotated. No evidence for the presence of a nitric oxide-forming nitrite reductase was found.

scholarly journals Draft Genome Sequence of the Anaerobic Ammonium-Oxidizing Bacterium “CandidatusBrocadia sp. 40”

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Muhammad Ali ◽  
Mohamed Fauzi Haroon ◽  
Yuko Narita ◽  
Lei Zhang ◽  
Dario Rangel Shaw ◽  
...  
Keyword(s):  
Growth Rate ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Anammox Bacterium ◽  
Coding Regions ◽  
Gene Coding

The anaerobic ammonium-oxidizing (anammox) bacterium “CandidatusBrocadia sp. 40” demonstrated the fastest growth rate compared to others in this taxon. Here, we report the 2.93-Mb draft genome sequence of this bacterium, which has 2,565 gene-coding regions, 41 tRNAs, and a singlerrnoperon.

scholarly journals Draft Genome Sequence of a “Candidatus Brocadia” Bacterium Enriched from Activated Sludge Collected in a Tropical Climate

2018 ◽  
Vol 6 (19) ◽  
pp. e00406-18 ◽  
Author(s):  
Xianghui Liu ◽  
Krithika Arumugam ◽  
Gayathri Natarajan ◽  
Thomas W. Seviour ◽  
Daniela I. Drautz-Moses ◽  
...  
Keyword(s):  
Nitric Oxide ◽  
Activated Sludge ◽  
Genome Sequence ◽  
Nitrite Reductase ◽  
Draft Genome ◽  
Tropical Climate ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Protein Coding Genes

ABSTRACT Here, we present the draft genome sequence of an anaerobic ammonium-oxidizing bacterium (AnAOB), “Candidatus Brocadia,” which was enriched in an anammox reactor. A 3.2-Mb genome sequence comprising 168 contigs was assembled, in which 2,765 protein-coding genes, 47 tRNAs, and one each of 5S, 16S, and 23S rRNAs were annotated. No evidence for the presence of a nitric oxide-forming nitrite reductase was found.

scholarly journals Genome Sequence of Rheinheimera salexigens sp. nov. Isolated from a Fishing Hook off O‘ahu, Hawai‘i

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Xuehua Wan ◽  
Shaobin Hou ◽  
Kazukuni Hayashi ◽  
James Anderson ◽  
Stuart P. Donachie
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Coding Regions ◽  
Roche 454

Rheinheimera salexigens KH87 T is an obligately halophilic gammaproteobacterium. The strain’s draft genome sequence, generated by the Roche 454 GS FLX+ platform, comprises two scaffolds of ~3.4 Mbp and ~3 kbp, with 3,030 protein-coding sequences and 58 tRNA coding regions. The G+C content is 42 mol%.

scholarly journals Draft Genome Sequence of a Novel Marine Anaerobic Ammonium-Oxidizing Bacterium, “Candidatus Scalindua sp.”

2019 ◽  
Vol 8 (20) ◽  
Author(s):  
Muhammad Ali ◽  
Dario Rangel Shaw ◽  
Pascal E. Saikaly
Keyword(s):  
Genome Sequence ◽  
Saline Solution ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Anammox Bacterium ◽  
Nucleotide Level ◽  
Column Reactor ◽  
Genomic Similarity

A novel anaerobic ammonium-oxidizing (anammox) bacterium was detected in an upflow column reactor treating synthetic nitrogen-rich saline solution. Here, we assembled a 4.59-Mb draft genome sequence of this bacterium, identified as a member of the genus “Candidatus Scalindua,” that has 84% nucleotide-level genomic similarity with the closest related anammox bacterium (“Candidatus Scalindua rubra”).

scholarly journals Draft Genome Sequence of Acinetobacter baumannii IITR88, a Bacterium Degrading Indoles and Other Aromatic Compounds

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Raj Kumar Regar ◽  
Vivek Kumar Gaur ◽  
Gayatri Mishra ◽  
Sudhir Jadhao ◽  
Mohan Kamthan ◽  
...  
Keyword(s):  
Acinetobacter Baumannii ◽  
Genome Sequence ◽  
Aromatic Compounds ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Coding Regions ◽  
Degrading Bacterium ◽  
Bhagirathi River

Here, we report the 4.16-Mb draft genome sequence of an indole-degrading bacterium, Acinetobacter baumannii IITR88, isolated from the Bhagirathi river in India. A total of 4,069 coding regions (CDSs), 3 rRNAs, and 52 tRNAs were predicted. Genes for the degradation of indoles, phenylacetaldehyde, anthranilate, and several other aromatic compounds were present.

scholarly journals Draft Genome Sequence of Pseudomonas sp. Strain CES, Containing the Entire Alkylxanthine Gene Cluster for Caffeine Breakdown

2020 ◽  
Vol 9 (28) ◽  
Author(s):  
Ryan M. Summers ◽  
Jonathan Shao ◽  
Meredith B. Mock ◽  
Chi Li Yu ◽  
Fernando E. Vega
Keyword(s):  
Nucleotide Sequence ◽  
Gene Cluster ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Pseudomonas Sp ◽  
Protein Coding ◽  
Coding Regions ◽  
Demethylation Pathway

ABSTRACT Pseudomonas strain CES was isolated from caffeine-enriched soil and found to possess the N-demethylation pathway for caffeine breakdown. We report the nucleotide sequence of the draft genome with 5,827,822 bp, 62.6% G+C content, and 5,427 protein-coding regions.

scholarly journals Draft Genome Sequence of a Polydroxyalkanoate-Synthesizing Bacterium, Bacillus sp. Strain PJC48, Isolated from Activated Sludge

2017 ◽  
Vol 5 (10) ◽  
Author(s):  
Jin-Jin Gu ◽  
Ying Zhou ◽  
Jian-Jiang Lu ◽  
Bang-Ce Ye
Keyword(s):  
Activated Sludge ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Biodegradable Materials ◽  
Bacillus Sp ◽  
Bacterium Bacillus ◽  
Strain Genome

ABSTRACT The genome sequence of a Bacillus strain is capable of synthesizing polyhydroxyalkanoates, and Bacillus sp. is considered a platform strain for the production of many biodegradable materials. Here, we present the sequence of the PJC48 strain genome, which is composed of three chromatin structures, an extracellular structure, and a cytoskeleton.

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