scholarly journals Draft Genome Sequence of a Novel Marine Anaerobic Ammonium-Oxidizing Bacterium, “Candidatus Scalindua sp.”

2019 ◽  
Vol 8 (20) ◽  
Author(s):  
Muhammad Ali ◽  
Dario Rangel Shaw ◽  
Pascal E. Saikaly
Keyword(s):  
Genome Sequence ◽  
Saline Solution ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Anammox Bacterium ◽  
Nucleotide Level ◽  
Column Reactor ◽  
Genomic Similarity

A novel anaerobic ammonium-oxidizing (anammox) bacterium was detected in an upflow column reactor treating synthetic nitrogen-rich saline solution. Here, we assembled a 4.59-Mb draft genome sequence of this bacterium, identified as a member of the genus “Candidatus Scalindua,” that has 84% nucleotide-level genomic similarity with the closest related anammox bacterium (“Candidatus Scalindua rubra”).

scholarly journals Draft Genome Sequence of Methanobacterium sp. Strain 34x, Reconstructed from an Enriched Electromethanogenic Biocathode

2019 ◽  
Vol 8 (45) ◽  
Author(s):  
Ala’a Ragab ◽  
Dario R. Shaw ◽  
Krishna P. Katuri ◽  
Pascal E. Saikaly
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Nucleotide Level ◽  
Content Type ◽  
Functional Potential ◽  
Insight Into ◽  
Genomic Similarity

A draft genome sequence of Methanobacterium sp. strain 34x was reconstructed from the metagenome of an enriched electromethanogenic biocathode operated in a microbial electrosynthesis (MES) reactor. Methanobacterium sp. strain 34x has 68.98% nucleotide-level genomic similarity with the closest related methanogen available with a whole-genome assembly, Methanobacterium lacus strain AL-21. This genome will provide insight into the functional potential of methanogens at the biocathodes of MES systems.

scholarly journals Draft genome sequence of a Candidatus Brocadia bacterium enriched from tropical-climate activated sludge

2017 ◽  
Author(s):  
Xianghui Liu ◽  
Krithika Arumugam ◽  
Gayathri Natarajan ◽  
Thomas W. Seviour ◽  
Daniela I. Drautz-Moses ◽  
...  
Keyword(s):  
Nitric Oxide ◽  
Activated Sludge ◽  
Genome Sequence ◽  
Nitrite Reductase ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Anammox Bacterium ◽  
Ribosomal Rnas ◽  
Coding Regions ◽  
Gene Coding

AbstractWe present the draft genome of an anaerobic ammonium-oxidizing (anammox) bacterium, cluster III Candidatus Brocadia, which was enriched in an anammox reactor. A 3.2 Mb genome sequence comprising 168 contigs was assembled, in which 2,765 gene-coding regions, 47 tRNAs, and 5S, 16S and 23S ribosomal RNAs were annotated. No evidence for the presence of a nitric oxide-forming nitrite reductase was found.

scholarly journals Draft Genome Sequence of the Anaerobic Ammonium-Oxidizing Bacterium “CandidatusBrocadia sp. 40”

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Muhammad Ali ◽  
Mohamed Fauzi Haroon ◽  
Yuko Narita ◽  
Lei Zhang ◽  
Dario Rangel Shaw ◽  
...  
Keyword(s):  
Growth Rate ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Anammox Bacterium ◽  
Coding Regions ◽  
Gene Coding

The anaerobic ammonium-oxidizing (anammox) bacterium “CandidatusBrocadia sp. 40” demonstrated the fastest growth rate compared to others in this taxon. Here, we report the 2.93-Mb draft genome sequence of this bacterium, which has 2,565 gene-coding regions, 41 tRNAs, and a singlerrnoperon.

scholarly journals Draft Genome Sequence of Bacteriophage vB_Eco_swan01

2017 ◽  
Vol 5 (28) ◽  
Author(s):  
Slawomir Michniewski ◽  
Tamsin Redgwell ◽  
David J. Scanlan ◽  
Andrew D. Millard
Keyword(s):  
Escherichia Coli ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Nucleotide Level ◽  
Content Type

ABSTRACT Bacteriophage vB_Eco_swan01 was isolated from an ornamental pool using Escherichia coli MG1655 as the host. Bacteriophage vB_Eco_swan01 has limited similarity with other known phages at the nucleotide level and likely represents a new bacteriophage species within the Tunavirinae.

scholarly journals Draft Genome Sequence of Trebouxiophyceae sp. Strain KSI-1, Isolated from an Island Hot Spring

2018 ◽  
Vol 7 (16) ◽  
Author(s):  
Hiro Takahashi ◽  
Satoshi Tanaka ◽  
Shuhei Hayashi ◽  
Shido Miyaki ◽  
Anna Takahashi ◽  
...  
Keyword(s):  
Oxidative Stress ◽  
Green Alga ◽  
Genome Sequence ◽  
Hot Spring ◽  
Draft Genome ◽  
Draft Genome Sequence

Trebouxiophyceae sp. KSI-1 is a green alga isolated from a seashore hot spring on Satsuma Iōjima in Kagoshima, Japan, and is highly tolerant to oxidative stress.

scholarly journals Draft Genome Sequence of Urease-Producing Pseudorhodobacter sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Si Chul Kim ◽  
Hyo Jung Lee
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Yellow Sea ◽  
Draft Genome ◽  
The Yellow Sea ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Here, we report the draft genome sequence of Pseudorhodobacter sp. strain E13, a Gram-negative, aerobic, nonflagellated, and rod-shaped bacterium which was isolated from the Yellow Sea in South Korea. The assembled genome sequence is 3,878,578 bp long with 3,646 protein-coding sequences in 159 contigs.

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