scholarly journals Using local convolutional neural networks for genomic prediction

2020 ◽  
Author(s):  
Torsten Pook ◽  
Jan Freudenthal ◽  
Arthur Korte ◽  
Henner Simianer
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Convolutional Neural Networks ◽  
Genomic Prediction ◽  
Linear Models ◽  
Predictive Ability ◽  
High Heritability ◽  
Fully Connected

ABSTRACTThe prediction of breeding values and phenotypes is of central importance for both livestock and crop breeding. With increasing computational power and more and more data to potentially utilize, Machine Learning and especially Deep Learning have risen in popularity over the last few years. In this study, we are proposing the use of local convolutional neural networks for genomic prediction, as a region specific filter corresponds much better with our prior genetic knowledge of traits than traditional convolutional neural networks. Model performances are evaluated on a simulated maize data panel (n = 10,000) and real Arabidopsis data (n = 2,039) for a variety of traits with the local convolutional neural network outperforming both multi layer perceptrons and convolutional neural networks for basically all considered traits. Linear models like the genomic best linear unbiased prediction that are often used for genomic prediction are outperformed by up to 24%. Highest gains in predictive ability was obtained in cases of medium trait complexity with high heritability and large training populations. However, for small dataset with 100 or 250 individuals for the training of the models, the local convolutional neural network is performing slightly worse than the linear models. Nonetheless, this is still 15% better than a traditional convolutional neural network, indicating a better performance and robustness of our proposed model architecture for small training populations. In addition to the baseline model, various other architectures with different windows size and stride in the local convolutional layer, as well as different number of nodes in subsequent fully connected layers are compared against each other. Finally, the usefulness of Deep Learning and in particular local convolutional neural networks in practice is critically discussed, in regard to multi dimensional inputs and outputs, computing times and other potential hazards.

scholarly journals KLASIFIKASI BATIK RIAU DENGAN MENGGUNAKAN CONVOLUTIONAL NEURAL NETWORKS (CNN)

2020 ◽  
Vol 9 (1) ◽  
pp. 7-10
Author(s):  
Hendry Fonda
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Artificial Neural Networks ◽  
Deep Learning ◽  
Convolutional Neural Networks ◽  
18Th Century ◽  
The Public ◽  
Artificial Neural ◽  
The Difference ◽  
Fully Connected

ABSTRACT Riau batik is known since the 18th century and is used by royal kings. Riau Batik is made by using a stamp that is mixed with coloring and then printed on fabric. The fabric used is usually silk. As its development, comparing Javanese  batik with riau batik Riau is very slowly accepted by the public. Convolutional Neural Networks (CNN) is a combination of artificial neural networks and deeplearning methods. CNN consists of one or more convolutional layers, often with a subsampling layer followed by one or more fully connected layers as a standard neural network. In the process, CNN will conduct training and testing of Riau batik so that a collection of batik models that have been classified based on the characteristics that exist in Riau batik can be determined so that images are Riau batik and non-Riau batik. Classification using CNN produces Riau batik and not Riau batik with an accuracy of 65%. Accuracy of 65% is due to basically many of the same motifs between batik and other batik with the difference lies in the color of the absorption in the batik riau. Kata kunci: Batik; Batik Riau; CNN; Image; Deep Learning   ABSTRAK   Batik Riau dikenal sejak abad ke 18 dan digunakan oleh bangsawan raja. Batik Riau dibuat dengan menggunakan cap yang dicampur dengan pewarna kemudian dicetak di kain. Kain yang digunakan biasanya sutra. Seiring perkembangannya, dibandingkan batik Jawa maka batik Riau sangat lambat diterima oleh masyarakat. Convolutional Neural Networks (CNN) merupakan kombinasi dari jaringan syaraf tiruan dan metode deeplearning. CNN terdiri dari satu atau lebih lapisan konvolutional, seringnya dengan suatu lapisan subsampling yang diikuti oleh satu atau lebih lapisan yang terhubung penuh sebagai standar jaringan syaraf. Dalam prosesnya CNN akan melakukan training dan testing terhadap batik Riau sehingga didapat kumpulan model batik yang telah terklasi    fikasi berdasarkan ciri khas yang ada pada batik Riau sehingga dapat ditentukan gambar (image) yang merupakan batik Riau dan yang bukan merupakan batik Riau. Klasifikasi menggunakan CNN menghasilkan batik riau dan bukan batik riau dengan akurasi 65%. Akurasi 65% disebabkan pada dasarnya banyak motif yang sama antara batik riau dengan batik lainnya dengan perbedaan terletak pada warna cerap pada batik riau. Kata kunci: Batik; Batik Riau; CNN; Image; Deep Learning

scholarly journals A convolutional neural network for predicting transcriptional regulators of genes in Arabidopsis transcriptome data reveals classification based on positive regulatory interactions

2019 ◽  
Author(s):  
Dan MacLean
Keyword(s):  
Neural Network ◽  
Gene Expression ◽  
Neural Networks ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Convolutional Neural Networks ◽  
Expression Profiles ◽  
Biological Data ◽  
Expression Data ◽  
Data Set

AbstractGene Regulatory networks that control gene expression are widely studied yet the interactions that make them up are difficult to predict from high throughput data. Deep Learning methods such as convolutional neural networks can perform surprisingly good classifications on a variety of data types and the matrix-like gene expression profiles would seem to be ideal input data for deep learning approaches. In this short study I compiled training sets of expression data using the Arabidopsis AtGenExpress global stress expression data set and known transcription factor-target interactions from the Arabidopsis PLACE database. I built and optimised convolutional neural networks with a best model providing 95 % accuracy of classification on a held-out validation set. Investigation of the activations within this model revealed that classification was based on positive correlation of expression profiles in short sections. This result shows that a convolutional neural network can be used to make classifications and reveal the basis of those calssifications for gene expression data sets, indicating that a convolutional neural network is a useful and interpretable tool for exploratory classification of biological data. The final model is available for download and as a web application.

scholarly journals Introspective analysis of convolutional neural networks for improving discrimination performance and feature visualisation

2021 ◽  
Vol 7 ◽  
pp. e497
Author(s):  
Shakeel Shafiq ◽  
Tayyaba Azim
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Convolutional Neural Network ◽  
Convolutional Neural Networks ◽  
Discrimination Performance ◽  
Input Image ◽  
Data Sets ◽  
Discrimination Power ◽  
Level Information ◽  
Fully Connected

Deep neural networks have been widely explored and utilised as a useful tool for feature extraction in computer vision and machine learning. It is often observed that the last fully connected (FC) layers of convolutional neural network possess higher discrimination power as compared to the convolutional and maxpooling layers whose goal is to preserve local and low-level information of the input image and down sample it to avoid overfitting. Inspired from the functionality of local binary pattern (LBP) operator, this paper proposes to induce discrimination into the mid layers of convolutional neural network by introducing a discriminatively boosted alternative to pooling (DBAP) layer that has shown to serve as a favourable replacement of early maxpooling layer in a convolutional neural network (CNN). A thorough research of the related works show that the proposed change in the neural architecture is novel and has not been proposed before to bring enhanced discrimination and feature visualisation power achieved from the mid layer features. The empirical results reveal that the introduction of DBAP layer in popular neural architectures such as AlexNet and LeNet produces competitive classification results in comparison to their baseline models as well as other ultra-deep models on several benchmark data sets. In addition, better visualisation of intermediate features can allow one to seek understanding and interpretation of black box behaviour of convolutional neural networks, used widely by the research community.

Identifying Emotion on Indonesian Tweets using Convolutional Neural Networks

2021 ◽  
Vol 5 (3) ◽  
pp. 584-593
Author(s):  
Naufal Hilmiaji ◽  
Kemas Muslim Lhaksmana ◽  
Mahendra Dwifebri Purbolaksono
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Performance Evaluation ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Convolutional Neural Networks ◽  
Text Classification ◽  
Classification Model ◽  
Learning Methods ◽  
Expected Performance

especially with the advancement of deep learning methods for text classification. Despite some effort to identify emotion on Indonesian tweets, its performance evaluation results have not achieved acceptable numbers. To solve this problem, this paper implements a classification model using a convolutional neural network (CNN), which has demonstrated expected performance in text classification. To easily compare with the previous research, this classification is performed on the same dataset, which consists of 4,403 tweets in Indonesian that were labeled using five different emotion classes: anger, fear, joy, love, and sadness. The performance evaluation results achieve the precision, recall, and F1-score at respectively 90.1%, 90.3%, and 90.2%, while the highest accuracy achieves 89.8%. These results outperform previous research that classifies the same classification on the same dataset.

scholarly journals Image Steganalysis via Diverse Filters and Squeeze-and-Excitation Convolutional Neural Network

Mathematics ◽  
2021 ◽  
Vol 9 (2) ◽  
pp. 189
Author(s):  
Feng Liu ◽  
Xuan Zhou ◽  
Xuehu Yan ◽  
Yuliang Lu ◽  
Shudong Wang
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Convolutional Neural Networks ◽  
State Of The Art ◽  
Image Steganalysis ◽  
Process Information ◽  
Effective Network ◽  
Convolution Filters

Steganalysis is a method to detect whether the objects contain secret messages. With the popularity of deep learning, using convolutional neural networks (CNNs), steganalytic schemes have become the chief method of combating steganography in recent years. However, the diversity of filters has not been fully utilized in the current research. This paper constructs a new effective network with diverse filter modules (DFMs) and squeeze-and-excitation modules (SEMs), which can better capture the embedding artifacts. As the essential parts, combining three different scale convolution filters, DFMs can process information diversely, and the SEMs can enhance the effective channels out from DFMs. The experiments presented that our CNN is effective against content-adaptive steganographic schemes with different payloads, such as S-UNIWARD and WOW algorithms. Moreover, some state-of-the-art methods are compared with our approach to demonstrate the outstanding performance.

scholarly journals Image recognition algorithms based on deep learning

2021 ◽  
Vol 2137 (1) ◽  
pp. 012056
Author(s):  
Hongli Ma ◽  
Fang Xie ◽  
Tao Chen ◽  
Lei Liang ◽  
Jie Lu
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Convolutional Neural Networks ◽  
Development Process ◽  
Research Direction ◽  
Learning Technology ◽  
Convolutional Network ◽  
Important Research Direction

Abstract Convolutional neural network is a very important research direction in deep learning technology. According to the current development of convolutional network, in this paper, convolutional neural networks are induced. Firstly, this paper induces the development process of convolutional neural network; then it introduces the structure of convolutional neural network and some typical convolutional neural networks. Finally, several examples of the application of deep learning is introduced.

scholarly journals Dog Breed Prediction using Convolutional Neural Network

2020 ◽  
Vol 9 (5) ◽  
pp. 318-322
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Image Classification ◽  
Convolutional Neural Networks ◽  
Graphical Representation ◽  
Outcome Analysis ◽  
Dog Breed ◽  
The One

Deep learning gives the strength on the way to train algorithms model that can handle the difficulties of info classification also prediction grounded on totally on arising information as of raw information. Convolutional Neural Networks (CNNs) gives single often used method for image classification and detection. In this exertion, we define a CNNbased approach for spotting dogs in per chance complex images and due to this fact reflect inconsideration on the identification of the one of kinds of dog breed. The experimental outcome analysis supported the standard metrics and thus the graphical representation confirms that the algorithm (CNN) gives good analysis accuracy for all the tested datasets

Small aircraft detection using deep learning

2021 ◽  
Vol ahead-of-print (ahead-of-print) ◽  
Author(s):  
Emre Kiyak ◽  
Gulay Unal
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Transfer Learning ◽  
Convolutional Neural Networks ◽  
Fine Tuning ◽  
Deep Convolutional Neural Networks ◽  
Content Type ◽  
Training Time

Purpose The paper aims to address the tracking algorithm based on deep learning and four deep learning tracking models developed. They compared with each other to prevent collision and to obtain target tracking in autonomous aircraft. Design/methodology/approach First, to follow the visual target, the detection methods were used and then the tracking methods were examined. Here, four models (deep convolutional neural networks (DCNN), deep convolutional neural networks with fine-tuning (DCNNFN), transfer learning with deep convolutional neural network (TLDCNN) and fine-tuning deep convolutional neural network with transfer learning (FNDCNNTL)) were developed. Findings The training time of DCNN took 9 min 33 s, while the accuracy percentage was calculated as 84%. In DCNNFN, the training time of the network was calculated as 4 min 26 s and the accuracy percentage was 91%. The training of TLDCNN) took 34 min and 49 s and the accuracy percentage was calculated as 95%. With FNDCNNTL, the training time of the network was calculated as 34 min 33 s and the accuracy percentage was nearly 100%. Originality/value Compared to the results in the literature ranging from 89.4% to 95.6%, using FNDCNNTL, better results were found in the paper.

scholarly journals Klasifikasi Citra Buah Pir Menggunakan Convolutional Neural Networks

2021 ◽  
Vol 11 (1) ◽  
pp. 65
Author(s):  
Syauqani Juliansyah ◽  
Arif Dwi Laksito
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Convolutional Neural Networks ◽  
Sample Data

Buah Pir (Pyrus) adalah salah satu buah yang kaya akan nutrisi, seperti vitamin, niasin, asam pantotenat, dan folacin. Pir salah satu buah favorit dan banyak digemari diindonesia. Sebab, rasa yang khas dan identik dengan banyak air, masir, dan manis. Setiap jenis buah pir memiliki karakteristik yang berbeda, tentu setiap jenisnya mempunyai rasa yang khusus sehingga menghasilkan harga dan pengistimewaan berbeda dari setiap orang. Para petani buah pir tentu memiliki tempat penyimpanan untuk mengumpulkan hasil dari panen yang didapat. Sehingga para petani memisahkan jenis buah secara manual yang tentu akan membutuhkan waktu, kebosanan dan biaya tinggi. Pada penelitian ini bertujuan untuk mengatasi permasalahan klasifikasi buah secara manual tersebut dengan menggunakan salah satu algoritma Deep Learning dalam klasifikasi suatu gambar yaitu Convolutional Neural Network. Studi ini melakukan uji akurasi pada dua proses yaitu training dan testing dengan akurasi yang didapatkan yaitu 100% untuk training dan   testing menggunakan 100 sample data baru dengan nilai akurasi 98%.

scholarly journals Experimental Discussion on Fire Image Recognition Based on Deep Learning

2021 ◽  
Vol 2066 (1) ◽  
pp. 012071
Author(s):  
Yongyi Cui ◽  
Fang Qu
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Convolutional Neural Networks ◽  
Image Recognition ◽  
Rapid Development ◽  
Fire Detection ◽  
Learning Technology ◽  
Fire Recognition

Abstract Fire detection technology based on video images is an emerging technology that has its own unique advantages in many aspects. With the rapid development of deep learning technology, Convolutional Neural Networks based on deep learning theory show unique advantages in many image recognition fields. This paper uses Convolutional Neural Networks to try to identify fire in video surveillance images. This paper introduces the main processing flow of Convolutional Neural Networks when completing image recognition tasks, and elaborates the basic principles and ideas of each stage of image recognition in detail. The Pytorch deep learning framework is used to build a Convolutional Neural Network for training, verification and testing for fire recognition. In view of the lack of a standard and authoritative fire recognition training set, we have conducted experiments on fires with various interference sources under various environmental conditions using a variety of fuels in the laboratory, and recorded videos. Finally, the Convolutional Neural Network was trained, verified and tested by using experimental videos, fire videos on the Internet as well as other interference source videos that may be misjudged as fires.

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