scholarly journals Data-driven filtration and segmentation of mesoscale neural dynamics

2021 ◽  
Author(s):  
Sydney C. Weiser ◽  
Brian R. Mullen ◽  
Desiderio Ascencio ◽  
James B. Ackman

Recording neuronal group activity across the cortical hemispheres from awake, behaving mice is essential for understanding information flow across cerebral networks. Video recordings of cerebral function comes with challenges, including optical and movement-associated vessel artifacts, and limited references for time series extraction. Here we present a data-driven workflow that isolates artifacts from calcium activity patterns, and segments independent functional units across the cortical surface. Independent Component Analysis utilizes the statistical interdependence of pixel activation to completely unmix signals from background noise, given sufficient spatial and temporal samples. We also utilize isolated signal components to produce segmentations of the cortical surface, unique to each individual’s functional patterning. Time series extraction from these maps maximally represent the underlying signal in a highly compressed format. These improved techniques for data pre-processing, spatial segmentation, and time series extraction result in optimal signals for further analysis.

2021 ◽  
Author(s):  
Amitabh Dube ◽  
Umesh Kumar ◽  
Kapil Gupta ◽  
Jitendra Gupta ◽  
Bhoopendra Patel ◽  
...  

The Human Mind, functional aspect of Human Brain, has been envisaged to be working on the tenets of Chaos, a seeming order within a disorder, the premise of Universe. The armamentarium of Human Mind makes use of distributed neuronal networks sub-serving Sensorial Mechanisms, Mirror Neurone System (MNS) and Motor Mechanisms etching a stochastic trajectory on the virtual phase-space of Human Mind, obeying the ethos of Chaos. The informational sensorial mechanisms recruit attentional mechanisms channelising through the window of chaotic neural dynamics onto MNS that providing algorithmic image information flow along virtual phase- space coordinates concluding onto motor mechanisms that generates and mirrors a stimulus- specific and stimulus-adequate response. The singularity of self-iterating fractal architectonics of Event-Related Synchrony (ERS), a Power Spectral Density (PSD) precept of electroencephalographic (EEG) time-series denotes preferential and categorical inhibition gateway and an Event-Related Desynchrony (ERD) represents event related and locked gateway to stimulatory/excitatory neuronal architectonics leading to stimulus-locked and adequate neural response. The contextual inference in relation to stochastic phase-space trajectory of self- iterating fractal of Off-Center α ERS (Central)-On-Surround α ERD-On Surround θ ERS document efficient neural dynamics of working memory., across patterned modulation and flow of the neurally coded information.


SLEEP ◽  
2021 ◽  
Vol 44 (Supplement_2) ◽  
pp. A111-A112
Author(s):  
Austin Vandegriffe ◽  
V A Samaranayake ◽  
Matthew Thimgan

Abstract Introduction Technological innovations have broadened the type and amount of activity data that can be captured in the home and under normal living conditions. Yet, converting naturalistic activity patterns into sleep and wakefulness states has remained a challenge. Despite the successes of current algorithms, they do not fill all actigraphy needs. We have developed a novel statistical approach to determine sleep and wakefulness times, called the Wasserstein Algorithm for Classifying Sleep and Wakefulness (WACSAW), and validated the algorithm in a small cohort of healthy participants. Methods WACSAW functional routines: 1) Conversion of the triaxial movement data into a univariate time series; 2) Construction of a Wasserstein weighted sum (WSS) time series by measuring the Wasserstein distance between equidistant distributions of movement data before and after the time-point of interest; 3) Segmenting the time series by identifying changepoints based on the behavior of the WSS series; 4) Merging segments deemed similar by the Levene test; 5) Comparing segments by optimal transport methodology to determine the difference from a flat, invariant distribution at zero. The resulting histogram can be used to determine sleep and wakefulness parameters around a threshold determined for each individual based on histogram properties. To validate the algorithm, participants wore the GENEActiv and a commercial grade actigraphy watch for 48 hours. The accuracy of WACSAW was compared to a detailed activity log and benchmarked against the results of the output from commercial wrist actigraph. Results WACSAW performed with an average accuracy, sensitivity, and specificity of >95% compared to detailed activity logs in 10 healthy-sleeping individuals of mixed sexes and ages. We then compared WACSAW’s performance against a common wrist-worn, commercial sleep monitor. WACSAW outperformed the commercial grade system in each participant compared to activity logs and the variability between subjects was cut substantially. Conclusion The performance of WACSAW demonstrates good results in a small test cohort. In addition, WACSAW is 1) open-source, 2) individually adaptive, 3) indicates individual reliability, 4) based on the activity data stream, and 5) requires little human intervention. WACSAW is worthy of validating against polysomnography and in patients with sleep disorders to determine its overall effectiveness. Support (if any):


Author(s):  
Tie Liang ◽  
Qingyu Zhang ◽  
Xiaoguang Liu ◽  
Bin Dong ◽  
Xiuling Liu ◽  
...  

Abstract Background The key challenge to constructing functional corticomuscular coupling (FCMC) is to accurately identify the direction and strength of the information flow between scalp electroencephalography (EEG) and surface electromyography (SEMG). Traditional TE and TDMI methods have difficulty in identifying the information interaction for short time series as they tend to rely on long and stable data, so we propose a time-delayed maximal information coefficient (TDMIC) method. With this method, we aim to investigate the directional specificity of bidirectional total and nonlinear information flow on FCMC, and to explore the neural mechanisms underlying motor dysfunction in stroke patients. Methods We introduced a time-delayed parameter in the maximal information coefficient to capture the direction of information interaction between two time series. We employed the linear and non-linear system model based on short data to verify the validity of our algorithm. We then used the TDMIC method to study the characteristics of total and nonlinear information flow in FCMC during a dorsiflexion task for healthy controls and stroke patients. Results The simulation results showed that the TDMIC method can better detect the direction of information interaction compared with TE and TDMI methods. For healthy controls, the beta band (14–30 Hz) had higher information flow in FCMC than the gamma band (31–45 Hz). Furthermore, the beta-band total and nonlinear information flow in the descending direction (EEG to EMG) was significantly higher than that in the ascending direction (EMG to EEG), whereas in the gamma band the ascending direction had significantly higher information flow than the descending direction. Additionally, we found that the strong bidirectional information flow mainly acted on Cz, C3, CP3, P3 and CPz. Compared to controls, both the beta-and gamma-band bidirectional total and nonlinear information flows of the stroke group were significantly weaker. There is no significant difference in the direction of beta- and gamma-band information flow in stroke group. Conclusions The proposed method could effectively identify the information interaction between short time series. According to our experiment, the beta band mainly passes downward motor control information while the gamma band features upward sensory feedback information delivery. Our observation demonstrate that the center and contralateral sensorimotor cortex play a major role in lower limb motor control. The study further demonstrates that brain damage caused by stroke disrupts the bidirectional information interaction between cortex and effector muscles in the sensorimotor system, leading to motor dysfunction.


Author(s):  
Ying Wang ◽  
Min-hui Yang ◽  
Hua-ying Zhang ◽  
Xian Wu ◽  
Wen-xi Hu

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