scholarly journals Admixture mapping reveals loci for carcass mass in red deer x sika hybrids in Kintyre, Scotland

2021 ◽  
Author(s):  
S. Eryn McFarlane ◽  
Josephine M. Pemberton

AbstractWe deployed admixture mapping on a sample of 386 deer from a hybrid swarm between native red deer (Cervus elaphus) and introduced Japanese sika (Cervus nippon) sampled in Kintyre, Scotland to search for Quantitative Trait Loci (QTL) underpinning phenotypic differences between the species. These two species are highly diverged genetically (Fst between pure species, based on 50K SNPs, = 0.532) and phenotypically: pure red have on average twice the carcass mass of pure sika in our sample (38.7kg vs 19.1 kg). After controlling for sex, age and population genetic structure we found ten autosomal genomic locations with QTL for carcass mass. Effect sizes ranged from 0.191 to 1.839 Kg and as expected, in all cases the allele derived from sika conferred lower carcass mass. The sika population was fixed for all small carcass mass alleles, whereas the red deer population was typically polymorphic. GO term analysis of genes lying in the QTL regions are associated with oxygen transport. Although body mass is a likely target of selection, none of the SNPs marking QTL are introgressing faster or slower than expected in either direction.

Author(s):  
S Eryn McFarlane ◽  
Josephine M Pemberton

Abstract We deployed admixture mapping on a sample of 386 deer from a hybrid swarm between native red deer (Cervus elaphus) and introduced Japanese sika (Cervus nippon) sampled in Kintyre, Scotland to search for Quantitative Trait Loci (QTL) underpinning phenotypic differences between the species. These two species are highly diverged genetically (Fst between pure species, based on 50K SNPs, = 0.532) and phenotypically: pure red have on average twice the carcass mass of pure sika in our sample (38.7 kg vs 19.1 kg). After controlling for sex, age and population genetic structure we found ten autosomal genomic locations with QTL for carcass mass. Effect sizes ranged from 0.191 to 1.839 Kg and as expected, in all cases the allele derived from sika conferred lower carcass mass. The sika population was fixed for all small carcass mass alleles, whereas the red deer population was typically polymorphic. GO term analysis of genes lying in the QTL regions are associated with oxygen transport. Although body mass is a likely target of selection, none of the SNPs marking QTL are introgressing faster or slower than expected in either direction.


2019 ◽  
Author(s):  
S. Eryn McFarlane ◽  
Darren C. Hunter ◽  
Helen V. Senn ◽  
Stephanie L. Smith ◽  
Rebecca Holland ◽  
...  

AbstractHybridization is a natural process at species range boundaries, but increasing numbers of species are hybridizing due to direct or indirect human activities. In such cases of anthropogenic hybridization, subsequent introgression can threaten the survival of native species. To date many such systems have been studied with too few genetic markers to assess the level of threat resulting from advanced backcrossing. Here we use 44,999 single nucleotide polymorphisms and the ADMIXTURE program to study two areas of Scotland where a panel of 22 diagnostic microsatellites previously identified introgression between native red deer (Cervus elaphus) and introduced Japanese sika (Cervus nippon). In Kintyre we reclassify 26% of deer from the pure species categories to the hybrid category whereas in the NW Highlands we only reclassify 2%. As expected, the reclassified individuals are mostly advanced backcrosses. We also investigate the ability of marker panels selected on different posterior allele frequency criteria to find hybrids assigned by the full marker set, and show that in our data, ancestry informative markers (i.e. those that are highly differentiated between the species, but not fixed) are better than diagnostic markers (those markers that are fixed between the species) because they are more evenly distributed in the genome. Diagnostic loci are concentrated on the X chromosome to the detriment of autosomal coverage.


1998 ◽  
Vol 244 (1) ◽  
pp. 123-134 ◽  
Author(s):  
A. M. Long ◽  
N.P. Moore ◽  
T. J. Hayden

1998 ◽  
Vol 244 (1) ◽  
pp. 123-134 ◽  
Author(s):  
A. M. Long ◽  
N.P. Moore ◽  
T. J. Hayden

1995 ◽  
Vol 32 (3) ◽  
pp. 215-220 ◽  
Author(s):  
J. C. Rhyan ◽  
D. A. Saari

Sections of tuberculous lesions from 23 elk ( Cervus elaphus nelsoni) and red deer ( Cervus elaphus elaphus), 12 fallow deer ( Dama dama), 10 sika deer ( Cervus nippon), and 30 cattle were examined and compared. Lesions were scored for caseous necrosis, mineralization, neutrophils, macrophages, giant cells, and acid-fast bacilli. Some differences in lesion morphology between the species were noted. Elk/red deer lesions had marked variation and often differed from bovine lesions in several characteristics; elk/red deer lesions usually had scattered peripheral mineralization rather than central mineralization and contained more neutrophils and fewer giant cells than did bovine lesions. Fallow deer lesions contained more giant cells but were otherwise indistinguishable from elk lesions. Sika deer lesions had more giant cells and fewer neutrophils than did lesions from cattle or other cervid species. Sika deer giant cells were larger and contained more nuclei than did giant cells in the other species.


2014 ◽  
Vol 113 (11) ◽  
pp. 4243-4250 ◽  
Author(s):  
Wei Zhao ◽  
Weizhe Zhang ◽  
Rongjun Wang ◽  
Weishi Liu ◽  
Aiqin Liu ◽  
...  

2008 ◽  
Vol 20 (1) ◽  
pp. 160 ◽  
Author(s):  
Y. Locatelli ◽  
J.-C. Vallet ◽  
G. Baril ◽  
J.-L. Touzé ◽  
A. Hendricks ◽  
...  

The aim of the present study was to assess the in vivo competence of in vitro-produced sika deer (Cervus nippon nippon) embryos after freezing–thawing and transfer into red deer (Cervus elaphus hippelaphus) recipients. During the breeding season, 11 adult sika deer hinds were synchronized as oocyte donors with an intravaginal sponge (45 mg of fluorogestone acetate, FGA) inserted for 12 days and removed immediately after laparoscopic ovum pick-up (LOPU), and renewed after 3 days. Ovarian stimulation was induced with an i.m. injection of 75 µg of cloprostenol (Estrumate) given on Day 8, followed by 3 i.m. injections of 0.1, 0.1, and 0.05 IU of ovine FSH (Ovagen) on Days 10 and 11 at 12-h intervals. On Day 12, hinds were anesthetized and oocytes were collected by LOPU from follicles >2 mm using an 18 G needle under moderate vacuum. COC were recovered and morphologically evaluated for quality (graded from 1 to 5). COC were then submitted to in vitro maturation, fertilization, and culture (IVM, IVF, and IVC) as described previously (Locatelli Y et al. 2005 Theriogenology 64, 1729–1739). For IVC, embryos were co-cultured with a monolayer of ovine oviduct epithelial cells in synthetic oviduct fluid medium supplemented with 10% FCS. On Day 8 post-insemination, all sika deer embryos at the blastocyst stage were cryopreserved via a standard bovine slow-freezing protocol. Of 44 LOPU sessions performed during the 1-month study, an average of 7.5 � 0.38 follicles were aspirated (mean � SEM), allowing the recovery of 3.65 � 0.38 COC per hind and per session, of which 80.0% were suitable for IVM (grades 1 and 2). Of 142 oocytes recovered, 57 cleaved after IVF (40.1%), and 14 embryos (24.6% of cleaved) reached the blastocyst stage after 8 days. At the end of the breeding season, 7 adult red deer hinds were synchronized as embryo recipients by inserting 2 intravaginal sponges per female (90 mg of FGA), for 13 days. Injections (i.m.) of 400 IU of eCG and 125 µg of cloprostenol (Estrumate) were administered 72 h before sponge removal. At Day 8 after sponge removal, straws containing frozen embryos were thawed and cryoprotectant was removed as described previously (see Locatelli Y et al. 2005 Theriogenology 64, 1729–1739). Two sika deer embryos were surgically transferred into uterine horn (unilaterally) of each red deer recipient. One of 7 red deer recipients was diagnosed pregnant by ultrasonography on Day 56. A healthy male sika deer fawn was born unassisted after 224 days of gestation. No complications were observed in initial recognition of the sika deer fawn by the red deer surrogate mother, nor in subsequent interactions. To our knowledge, this is the first report of an interspecific pregnancy obtained after in vitro embryo production and embryo transfer in deer species. In conclusion, interspecific embryo transfer after IVP may represent a useful tool for the preservation and amplification of captive residual populations of endangered deer species. Further studies are required to increase the rate of cleavage after LOPU-IVF as well as viability of frozen–thawed IVP embryos.


Author(s):  
Stephanie L. Smith ◽  
Helen V. Senn ◽  
Sílvia Pérez-Espona ◽  
Megan T. Wyman ◽  
Elizabeth Heap ◽  
...  

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