scholarly journals Differential ion dehydration energetics explains selectivity in the non-canonical lysosomal K+ channel TMEM175

2021 ◽  
Author(s):  
SeCheol Oh ◽  
Fabrizio Marinelli ◽  
Wenchang Zhou ◽  
Jooyeon Lee ◽  
Ho Jeong Choi ◽  
...  

Structures of the human lysosomal K+ channel TMEM175 in open and closed states revealed a novel architecture lacking the canonical K+ selectivity filter motif present in previously known K+ channel structures. A hydrophobic constriction composed of four isoleucine residues was resolved in the pore and proposed to serve as the gate in the closed state, and to confer ion selectivity in the open state. Here, we achieve higher-resolution structures of the open and closed states and employ molecular dynamics simulations to analyze the conducting properties of the putative open state, demonstrating that it is capable of permeating K+ ions at the expected rate. Monovalent cations must dehydrate significantly to penetrate the narrow hydrophobic constriction, but ion flow is assisted by a favorable electrostatic field generated by the protein that spans the length of the pore. The balance of these opposing energetic factors explains why permeation is feasible, and why TMEM175 is selective for K+ over Na+, despite the absence of the canonical selectivity filter. Accordingly, mutagenesis experiments reveal an exquisite sensitivity of the channel to perturbations that mitigate the constriction. Together, these data reveal a novel mechanism for selective permeation of ions by TMEM175 that is unlike that of other K+ channels.

2017 ◽  
Vol 112 (3) ◽  
pp. 417a
Author(s):  
Gianni Klesse ◽  
Jemma Trick ◽  
Sivapalan Chelvaniththilan ◽  
Prafulla Aryal ◽  
Jayne Wallace ◽  
...  

2004 ◽  
Vol 30 (11-12) ◽  
pp. 749-754 ◽  
Author(s):  
Riccardo Spezia ◽  
Cédric Nicolas ◽  
François-Xavier Coudert ◽  
Pierre Archirel ◽  
Rodolphe Vuilleumier ◽  
...  

2011 ◽  
Vol 138 (6) ◽  
pp. 571-580 ◽  
Author(s):  
Albert C. Pan ◽  
Luis G. Cuello ◽  
Eduardo Perozo ◽  
Benoît Roux

The amount of ionic current flowing through K+ channels is determined by the interplay between two separate time-dependent processes: activation and inactivation gating. Activation is concerned with the stimulus-dependent opening of the main intracellular gate, whereas inactivation is a spontaneous conformational transition of the selectivity filter toward a nonconductive state occurring on a variety of timescales. A recent analysis of multiple x-ray structures of open and partially open KcsA channels revealed the mechanism by which movements of the inner activation gate, formed by the inner helices from the four subunits of the pore domain, bias the conformational changes at the selectivity filter toward a nonconductive inactivated state. This analysis highlighted the important role of Phe103, a residue located along the inner helix, near the hinge position associated with the opening of the intracellular gate. In the present study, we use free energy perturbation molecular dynamics simulations (FEP/MD) to quantitatively elucidate the thermodynamic basis for the coupling between the intracellular gate and the selectivity filter. The results of the FEP/MD calculations are in good agreement with experiments, and further analysis of the repulsive, van der Waals dispersive, and electrostatic free energy contributions reveals that the energetic basis underlying the absence of inactivation in the F103A mutation in KcsA is the absence of the unfavorable steric interaction occurring with the large Ile100 side chain in a neighboring subunit when the intracellular gate is open and the selectivity filter is in a conductive conformation. Macroscopic current analysis shows that the I100A mutant indeed relieves inactivation in KcsA, but to a lesser extent than the F103A mutant.


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