scholarly journals Proteomic Analysis of Protein Posttranslational Modifications by Mass Spectrometry

2016 ◽  
Vol 2016 (3) ◽  
pp. pdb.top077743 ◽  
Author(s):  
Danielle L. Swaney ◽  
Judit Villén
2012 ◽  
Vol 421 (2) ◽  
pp. 517-525 ◽  
Author(s):  
Quanzhou Luo ◽  
Jette Wypych ◽  
Xinzhao Grace Jiang ◽  
Xin Zhang ◽  
Shun Luo ◽  
...  

2012 ◽  
Vol 421 (2) ◽  
pp. 506-516 ◽  
Author(s):  
Xinzhao Grace Jiang ◽  
Izydor Apostol ◽  
Quanzhou Luo ◽  
Jeffrey Lewis ◽  
Ronald Keener ◽  
...  

FEBS Open Bio ◽  
2021 ◽  
Author(s):  
Khadija Daoudi ◽  
Christian Malosse ◽  
Ayoub Lafnoune ◽  
Bouchra Darkaoui ◽  
Salma Chakir ◽  
...  

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Peng Gao ◽  
Xianwei Ma ◽  
Ming Yuan ◽  
Yulan Yi ◽  
Guoke Liu ◽  
...  

AbstractUbiquitination is one of the most prevalent protein posttranslational modifications. Here, we show that E3 ligase Nedd4l positively regulates antiviral immunity by catalyzing K29-linked cysteine ubiquitination of TRAF3. Deficiency of Nedd4l significantly impairs type I interferon and proinflammatory cytokine production induced by virus infection both in vitro and in vivo. Nedd4l deficiency inhibits virus-induced ubiquitination of TRAF3, the binding between TRAF3 and TBK1, and subsequent phosphorylation of TBK1 and IRF3. Nedd4l directly interacts with TRAF3 and catalyzes K29-linked ubiquitination of Cys56 and Cys124, two cysteines that constitute zinc fingers, resulting in enhanced association between TRAF3 and E3 ligases, cIAP1/2 and HECTD3, and also increased K48/K63-linked ubiquitination of TRAF3. Mutation of Cys56 and Cys124 diminishes Nedd4l-catalyzed K29-linked ubiquitination, but enhances association between TRAF3 and the E3 ligases, supporting Nedd4l promotes type I interferon production in response to virus by catalyzing ubiquitination of the cysteines in TRAF3.


Amyloid ◽  
2021 ◽  
pp. 1-5
Author(s):  
Magali Colombat ◽  
Béatrice Barres ◽  
Claire Renaud ◽  
David Ribes ◽  
Sarah Pericard ◽  
...  

2021 ◽  
Vol 10 (11) ◽  
pp. 2309
Author(s):  
Sarah R. Weber ◽  
Yuanjun Zhao ◽  
Christopher Gates ◽  
Jingqun Ma ◽  
Felipe da Veiga Leprevost ◽  
...  

Vitreous fluid is becoming an increasingly popular medium for the study of retinal disease. Numerous studies have demonstrated that proteomic analysis of the vitreous from patients with proliferative diabetic retinopathy yields valuable molecular information regarding known and novel proteins and pathways involved in this disease. However, there is no standardized methodology for vitreous proteomic studies. Here, we share a suggested protocol for such studies and outline the various experimental and analytic methods that are currently available. We also review prior mass spectrometry-based proteomic studies of the vitreous from patients with proliferative diabetic retinopathy, discuss common pitfalls of these studies, and propose next steps for moving the field forward.


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