scholarly journals Protein–ligand interactions investigated by thermal shift assays (TSA) and dual polarization interferometry (DPI)

2015 ◽  
Vol 71 (1) ◽  
pp. 36-44 ◽  
Author(s):  
Morten K. Grøftehauge ◽  
Nelly R. Hajizadeh ◽  
Marcus J. Swann ◽  
Ehmke Pohl

Over the last decades, a wide range of biophysical techniques investigating protein–ligand interactions have become indispensable tools to complement high-resolution crystal structure determinations. Current approaches in solution range from high-throughput-capable methods such as thermal shift assays (TSA) to highly accurate techniques including microscale thermophoresis (MST) and isothermal titration calorimetry (ITC) that can provide a full thermodynamic description of binding events. Surface-based methods such as surface plasmon resonance (SPR) and dual polarization interferometry (DPI) allow real-time measurements and can provide kinetic parameters as well as binding constants. DPI provides additional spatial information about the binding event. Here, an account is presented of new developments and recent applications of TSA and DPI connected to crystallography.

2018 ◽  
Vol 13 (04) ◽  
pp. 133-155
Author(s):  
Priyanka Biswas

Protein–ligand interactions act as a pivot to the understanding of most of the biological interactions. The study of interactions between proteins and cellular molecules has led to the establishment and identification of various important pathways that control biological systems. Investigators working in different fields of biological sciences have an intrinsic interest in this field and complement their findings by the application of different biophysical approaches and tools to quantify protein–ligand interactions that include protein–small molecules, protein–DNA, protein–RNA, protein–protein both in vitro and in vivo. In this paper, the various biophysical techniques that can be employed to study such interactions will be discussed. In addition to native gel electrophoresis and fluorescence-based methods, more details will be discussed, on the broad range of modern day biophysical tools such as Circular Dichroism, Fourier Transform Infrared (FTIR) Spectroscopy, Isothermal Titration Calorimetry, Analytical Ultracentrifugation, Surface Plasmon Resonance, Fluorescence Correlation Spectroscopy, Differential Scanning Fluorimetry, Nuclear Magnetic Resonance, Mass Spectroscopy, Single Molecule Spectroscopy, Dual Polarization Interferometry, Micro Scale Thermophoresis and Electro–switchable Biosensors that can be used to study the different aspects of protein–ligand interactions.


Langmuir ◽  
2004 ◽  
Vol 20 (5) ◽  
pp. 1827-1832 ◽  
Author(s):  
Jian R. Lu ◽  
Marcus J. Swann ◽  
Louise L. Peel ◽  
Neville J. Freeman

2014 ◽  
Vol 115 (1) ◽  
pp. 265-294 ◽  
Author(s):  
Jorge Escorihuela ◽  
Miguel Ángel González-Martínez ◽  
José Luis López-Paz ◽  
Rosa Puchades ◽  
Ángel Maquieira ◽  
...  

2020 ◽  
Vol 92 (14) ◽  
pp. 10007-10015 ◽  
Author(s):  
Yu Xue ◽  
Yu Wang ◽  
Shuang Wang ◽  
Mengxia Yan ◽  
Jianshe Huang ◽  
...  

2015 ◽  
Vol 51 (26) ◽  
pp. 5645-5648 ◽  
Author(s):  
Yu Zheng ◽  
Tao Hu ◽  
Chuanxia Chen ◽  
Fan Yang ◽  
Xiurong Yang

Fabrication of an anti-fouling aptasensing interface using BSA and PEG cooperatively and detection of thrombin based on the DPI technique.


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