A multibody atomic statistical potential for the prediction of enzyme-inhibitor binding energy

Author(s):  
M. Masso
2021 ◽  
Author(s):  
Lewis Turner ◽  
Alexander Lund Nielsen ◽  
Lucy Lin ◽  
Antonio J. Campedelli ◽  
Nicholas Silvaggi ◽  
...  

We have used crystal structures and molecular modeling to evaluate inhibitor binding modes and design a series of compounds to take advantage of a new, cryptic, hydrophobic sub-pocket. This is a classical SBDD approach to improving enzyme/inhibitor interactions.


2002 ◽  
Vol 40 (13) ◽  
pp. S98-S105 ◽  
Author(s):  
Tiffany S. Derrick ◽  
Laura H. Lucas ◽  
Jean-Luc Dimicoli ◽  
Cynthia K. Larive

2020 ◽  
Author(s):  
Huma Khan ◽  
Tahir Husain ◽  
Monika Kataria ◽  
Amit Seth ◽  
Md. Zubbair Malik ◽  
...  

AbstractHypertension is one of a major reason of mortality and morbidity and it is associated with heart and renal disease. The aim of this study is to find out the antihypertensive role of bioactive compounds from selected medicinal plants targeting ACE molecule which so far is not known. The plants taken in this study were Moringa oleifera, Azadirachta indica, and Hibiscus sabdariffa. The nitric oxide and superoxide scavenging property vary from 39.50% to 68% and 37.67 % to 75.50 %. respectively. The inhibition of ACE activity was found maximally in methanolic extract of A. indica (74 %), followed by H. sabdariffa (73.4%), and least in M. oleifera (71.8 %). The bioactive chloroform fraction was characterized for the presence of compound using standard techniques such as LCMS and NMR (13C-NMR 1H-NMR). The results revealed the presence of beta-sitosterol in M. oleifera, azadiradionolide in A. indica and hibiscitrin in H. sabdariffa. The compounds have shown significant low binding energy for hibiscitrin (−12.3kcal/mol), beta-sitosterol (−11.2kcal/mol) and azadiradionolide (−11.3kcal/mol) indicating the high efficacy of binding on the enzyme. While, binding energy of drug captopril was −5.6kcal/mol & enalpril - 8.1kcal/mol in the same pocket of the ACE molecule. Upon subjecting molecular dynamic simulation results indicated that beta sitosterol complex provided more compactness than the hibiscitrin and azadiradionolide compounds. The current study delivers a new perspective for the drug development against systolic blood pressure regulation and also opens new horizons for considering alternate highly potent drug target for hypertension.


1984 ◽  
Vol 30 (5) ◽  
pp. 696-700 ◽  
Author(s):  
F Fyhrquist ◽  
I Tikkanen ◽  
C Grönhagen-Riska ◽  
L Hortling ◽  
M Hichens

Abstract We describe a new principle for the determination of enzymes, here applied to angiotensin-converting enzyme (ACE, EC 3.4.15.1) in human serum. The enzyme inhibitor binding assay is based on specific binding of labeled inhibitor to the active center of the enzyme. Serum (10-15 microL) is incubated with 125I-labeled ACE inhibitor (" 351A ," a p- hydroxybenzamidine derivative of N-(1-carboxy-3-phenylpropyl)-L-lysyl-L-proline) at pH 7.0 at 37 degrees C for 2 h in a non-equilibrated system. Inhibitor bound to ACE is separated by adsorption to coated charcoal, the radioactivity remaining in the supernate is counted, and the ACE value is calculated from a standard curve. Sensitivity for ACE in serum is 200 U/L, corresponding to 5.0 ng of ACE purified from human lung. The coefficient of variation was 3.9% within assay, and 6.4% between assays for normal ACE activities. Correlation with a comparison spectrophotometric method (Am J Med 59: 363-372, 1975) for ACE assay was excellent (r = 0.98) in 59 samples from healthy subjects and from patients with various diseases including active sarcoidosis. The novel assay principle presented here is simple and specific, and can be extended to use with various biological fluids and tissues, and to other enzymes as well.


2002 ◽  
Vol 124 (15) ◽  
pp. 3853-3857 ◽  
Author(s):  
Paul A. Bartlett ◽  
Naeem Yusuff ◽  
Alice C. Rico ◽  
Mika K. Lindvall

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