The Transient Characters of the Directed Motion of Protein Motors

Author(s):  
Weixia Wu ◽  
Yong Zhan ◽  
Yingrong Han ◽  
Yafei Chen ◽  
Hui Zhou ◽  
...  
Author(s):  
S.B. Andrews ◽  
R.D. Leapman ◽  
P.E. Gallant ◽  
T.S. Reese

As part of a study on protein interactions involved in microtubule (MT)-based transport, we used the VG HB501 field-emission STEM to obtain low-dose dark-field mass maps of isolated, taxol-stabilized MTs and correlated these micrographs with detailed stereo images from replicas of the same MTs. This approach promises to be useful for determining how protein motors interact with MTs. MTs prepared from bovine and squid brain tubulin were purified and free from microtubule-associated proteins (MAPs). These MTs (0.1-1 mg/ml tubulin) were adsorbed to 3-nm evaporated carbon films supported over Formvar nets on 600-m copper grids. Following adsorption, the grids were washed twice in buffer and then in either distilled water or in isotonic or hypotonic ammonium acetate, blotted, and plunge-frozen in ethane/propane cryogen (ca. -185 C). After cryotransfer into the STEM, specimens were freeze-dried and recooled to ca.-160 C for low-dose (<3000 e/nm2) dark-field mapping. The molecular weights per unit length of MT were determined relative to tobacco mosaic virus standards from elastic scattering intensities. Parallel grids were freeze-dried and rotary shadowed with Pt/C at 14°.


Author(s):  
Sauro Succi

Fluid flow at nanoscopic scales is characterized by the dominance of thermal fluctuations (Brownian motion) versus directed motion. Thus, at variance with Lattice Boltzmann models for macroscopic flows, where statistical fluctuations had to be eliminated as a major cause of inefficiency, at the nanoscale they have to be summoned back. This Chapter illustrates the “nemesis of the fluctuations” and describe the way they have been inserted back within the LB formalism. The result is one of the most active sectors of current Lattice Boltzmann research.


2007 ◽  
Vol 21 (28) ◽  
pp. 1915-1921 ◽  
Author(s):  
SHUTANG WEN ◽  
HONGWEI ZHANG ◽  
LEIAN LIU ◽  
XIAOFENG SUN ◽  
YUXIAO LI

We investigated the motion of two-head Brownian motors by introducing a model in which the two heads coupled through an elastic spring is subjected to a stochastic flashing potential. The ratchet potential felt by the individual head is anti-correlated. The mean velocity was calculated based on Langevin equations. It turns out that we can obtain a unidirectional current. The current is sensitive to the transition rates and neck length and other parameters. The coupling of transition rate and neck length leads to variations both in the values and directions of currency. With a larger neck length, the bi-particle system has a larger velocity in one direction, while with a smaller neck length, it has a smaller velocity in the other direction. This is very likely the case of myosins with a larger neck length and larger velocity in the positive direction of filaments and kinesins with a smaller neck length and smaller velocity in the negative direction of microtubules. We also further investigated how current reversal depended on the neck length and the transition rates.


2004 ◽  
Vol 16 (10) ◽  
pp. 1695-1705 ◽  
Author(s):  
Johannes Schultz ◽  
Hiroshi Imamizu ◽  
Mitsuo Kawato ◽  
Chris D. Frith

Previous functional imaging experiments in humans showed activation increases in the posterior superior temporal gyrus and sulcus during observation of geometrical shapes whose movements appear intentional or goal-directed. We modeled a chase scenario between two objects, in which the chasing object used different strategies to reach the target object: The chaser either followed the target's path or appeared to predict its end position. Activation in the superior temporal gyrus of human observers was greater when the chaser adopted a predict rather than a follow strategy. Attending to the chaser's strategy induced slightly greater activation in the left superior temporal gyrus than attending to the outcome of the chase. These data implicate the superior temporal gyrus in the identification of objects displaying complex goal-directed motion.


2021 ◽  
Vol 927 ◽  
Author(s):  
Ruben Poehnl ◽  
William Uspal

Chemically active colloids self-propel by catalysing the decomposition of molecular ‘fuel’ available in the surrounding solution. If the various molecular species involved in the reaction have distinct interactions with the colloid surface, and if the colloid has some intrinsic asymmetry in its surface chemistry or geometry, there will be phoretic flows in an interfacial layer surrounding the particle, leading to directed motion. Most studies of chemically active colloids have focused on spherical, axisymmetric ‘Janus’ particles, which (in the bulk, and in absence of fluctuations) simply move in a straight line. For particles with a complex (non-spherical and non-axisymmetric) geometry, the dynamics can be much richer. Here, we consider chemically active helices. Via numerical calculations and slender body theory, we study how the translational and rotational velocities of the particle depend on geometry and the distribution of catalytic activity over the particle surface. We confirm the recent finding of Katsamba et al. (J. Fluid Mech., vol. 898, 2020, p. A24) that both tangential and circumferential concentration gradients contribute to the particle velocity. The relative importance of these contributions has a strong impact on the motion of the particle. We show that, by a judicious choice of the particle design parameters, one can suppress components of angular velocity that are perpendicular to the screw axis, or even select for purely ‘sideways’ translation of the helix.


Soft Matter ◽  
2013 ◽  
Vol 9 (12) ◽  
pp. 3255 ◽  
Author(s):  
Mew-Bing Wan ◽  
YongSeok Jho
Keyword(s):  

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