Survey: Functional Module Detection from Protein-Protein Interaction Networks

IEEE Transactions on Knowledge and Data Engineering ◽

10.1109/tkde.2012.225 ◽

2014 ◽

Vol 26 (2) ◽

pp. 261-277 ◽

Author(s):

Junzhong Ji ◽

Aidong Zhang ◽

Chunnian Liu ◽

Xiaomei Quan ◽

Zhijun Liu

Keyword(s):

Protein Interaction ◽

Functional Module ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Module Detection ◽

Protein Protein Interaction Networks

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A novel functional module detection algorithm for protein-protein interaction networks

Algorithms for Molecular Biology ◽

10.1186/1748-7188-1-24 ◽

2006 ◽

Vol 1 (1) ◽

Author(s):

Woochang Hwang ◽

Young-Rae Cho ◽

Aidong Zhang ◽

Murali Ramanathan

Keyword(s):

Protein Interaction ◽

Functional Module ◽

Detection Algorithm ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Module Detection ◽

Protein Protein Interaction Networks

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A Network Hierarchy-Based method for functional module detection in protein–protein interaction networks

Journal of Theoretical Biology ◽

10.1016/j.jtbi.2018.06.026 ◽

2018 ◽

Vol 455 ◽

pp. 26-38 ◽

Author(s):

Wei Liu ◽

Liangyu Ma ◽

Byeungwoo Jeon ◽

Ling Chen ◽

Bolun Chen

Keyword(s):

Protein Interaction ◽

Functional Module ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Module Detection ◽

Network Hierarchy ◽

Protein Protein Interaction Networks

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ACC-FMD: ant colony clustering for functional module detection in protein-protein interaction networks

International Journal of Data Mining and Bioinformatics ◽

10.1504/ijdmb.2015.067323 ◽

2015 ◽

Vol 11 (3) ◽

pp. 331 ◽

Author(s):

Junzhong Ji ◽

Hongxin Liu ◽

Aidong Zhang ◽

Zhijun Liu ◽

Chunnian Liu

Keyword(s):

Protein Interaction ◽

Functional Module ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Module Detection ◽

Ant Colony Clustering ◽

Protein Protein Interaction Networks

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MAE-FMD: Multi-agent evolutionary method for functional module detection in protein-protein interaction networks

BMC Bioinformatics ◽

10.1186/1471-2105-15-325 ◽

2014 ◽

Vol 15 (1) ◽

Author(s):

Jun Zhong Ji ◽

Lang Jiao ◽

Cui Cui Yang ◽

Jia Wei Lv ◽

Ai Dong Zhang

Keyword(s):

Protein Interaction ◽

Functional Module ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Evolutionary Method ◽

Module Detection ◽

Multi Agent ◽

Protein Protein Interaction Networks

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HFADE-FMD: a hybrid approach of fireworks algorithm and differential evolution strategies for functional module detection in protein-protein interaction networks

Applied Intelligence ◽

10.1007/s10489-020-01791-4 ◽

2020 ◽

Author(s):

Junzhong Ji ◽

Hanghang Xiao ◽

Cuicui Yang

Keyword(s):

Differential Evolution ◽

Protein Interaction ◽

Functional Module ◽

Hybrid Approach ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Fireworks Algorithm ◽

Protein Protein Interaction ◽

Module Detection ◽

Protein Protein Interaction Networks

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BFO-FMD: bacterial foraging optimization for functional module detection in protein–protein interaction networks

Soft Computing ◽

10.1007/s00500-017-2584-9 ◽

2017 ◽

Vol 22 (10) ◽

pp. 3395-3416 ◽

Author(s):

Cuicui Yang ◽

Junzhong Ji ◽

Aidong Zhang

Keyword(s):

Protein Interaction ◽

Functional Module ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Bacterial Foraging Optimization ◽

Protein Protein Interaction ◽

Bacterial Foraging ◽

Module Detection ◽

Protein Protein Interaction Networks

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Simplified Swarm Optimization-Based Function Module Detection in Protein–Protein Interaction Networks

Applied Sciences ◽

10.3390/app7040412 ◽

2017 ◽

Vol 7 (4) ◽

pp. 412 ◽

Author(s):

Xianghan Zheng ◽

Lingting Wu ◽

Shaozhen Ye ◽

Riqing Chen

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Swarm Optimization ◽

Protein Protein Interaction ◽

Module Detection ◽

Protein Protein Interaction Networks ◽

Function Module

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Faculty Opinions recommendation of Modular decomposition of protein-protein interaction networks.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.1020428.232579 ◽

2004 ◽

Author(s):

Ruedi Aebersold

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Modular Decomposition ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Faculty Opinions recommendation of Integrating protein-protein interaction networks with phenotypes reveals signs of interactions.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.718178553.793487291 ◽

2013 ◽

Author(s):

Marc Therrien ◽

Dariel Ashton-Beaucage

Keyword(s):

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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Inferring Protein-Protein Interaction Networks From Mass Spectrometry-Based Proteomic Approaches: A Mini-Review

Computational and Structural Biotechnology Journal ◽

10.1016/j.csbj.2019.05.007 ◽

2019 ◽

Vol 17 ◽

pp. 805-811 ◽

Author(s):

Kumar Yugandhar ◽

Shagun Gupta ◽

Haiyuan Yu

Keyword(s):

Mass Spectrometry ◽

Protein Interaction ◽

Protein Interaction Networks ◽

Interaction Networks ◽

Protein Protein Interaction ◽

Protein Protein Interaction Networks

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