scholarly journals Evaluation of a Semi-automated Semantic Annotation Approach for Bootstrapping the Analysis of Large-Scale Web Service Networks

Author(s):  
Shahab Mokarizadeh ◽  
Peep Kungas ◽  
Mihhail Matskin
Author(s):  
Stephen Dill ◽  
Nadav Eiron ◽  
David Gibson ◽  
Daniel Gruhl ◽  
R. Guha ◽  
...  

2009 ◽  
Vol 12 (3) ◽  
pp. 321-343 ◽  
Author(s):  
Hyunyoung Kil ◽  
Seog-Chan Oh ◽  
Ergin Elmacioglu ◽  
Wonhong Nam ◽  
Dongwon Lee

Author(s):  
Surya Nepal ◽  
John Zic

In the Service Oriented Architecture (SOA) model, a service is characterized by its exchange of asynchronous messages, and a service contract is a desirable composition of a variety of messages. Though this model is simple, implementing large-scale, cross-organizational distributed applications may be difficult to achieve in general, as there is no guarantee that service composition will be possible because of incompatibilities of Web service contracts. We categorize compatibility issues in Web service contracts into two broad categories: (a) between contracts of different services (which we define as a composability problem), and (b) a service contract and its implementation (which we define as a conformance problem). This chapter examines and addresses these problems, first by identifying and specifying contract compatibility conditions, and second, through the use of compatibility checking tools that enable application developers to perform checks at design time.


2020 ◽  
Vol 36 (8) ◽  
pp. 2620-2622 ◽  
Author(s):  
Irina Balaur ◽  
Ludovic Roy ◽  
Alexander Mazein ◽  
S Gökberk Karaca ◽  
Ugur Dogrusoz ◽  
...  

Abstract Motivation CellDesigner is a well-established biological map editor used in many large-scale scientific efforts. However, the interoperability between the Systems Biology Graphical Notation (SBGN) Markup Language (SBGN-ML) and the CellDesigner’s proprietary Systems Biology Markup Language (SBML) extension formats remains a challenge due to the proprietary extensions used in CellDesigner files. Results We introduce a library named cd2sbgnml and an associated web service for bidirectional conversion between CellDesigner’s proprietary SBML extension and SBGN-ML formats. We discuss the functionality of the cd2sbgnml converter, which was successfully used for the translation of comprehensive large-scale diagrams such as the RECON Human Metabolic network and the complete Atlas of Cancer Signalling Network, from the CellDesigner file format into SBGN-ML. Availability and implementation The cd2sbgnml conversion library and the web service were developed in Java, and distributed under the GNU Lesser General Public License v3.0. The sources along with a set of examples are available on GitHub (https://github.com/sbgn/cd2sbgnml and https://github.com/sbgn/cd2sbgnml-webservice, respectively). Supplementary information Supplementary data are available at Bioinformatics online.


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