Experimental insight into the process of parasite community assembly

2016 ◽  
Vol 85 (5) ◽  
pp. 1222-1233 ◽  
Author(s):  
Sarah A. Budischak ◽  
Eric P. Hoberg ◽  
Art Abrams ◽  
Anna E. Jolles ◽  
Vanessa O. Ezenwa
2020 ◽  
Author(s):  
Joshua I. Brian ◽  
David C. Aldridge

AbstractUnderstanding how environmental drivers influence the construction of parasite communities, in addition to how parasites may interact at an infracommunity level, are fundamental requirements for the study of parasite ecology. Knowledge of how parasite communities are assembled will help to predict the risk of parasitism for hosts, and model how parasite communities may change under variable conditions. However, studies frequently rely on presence-absence data and examine multiple host species or sites, metrics which may be too coarse to characterise nuanced within-host patterns. Here, we utilise a novel host system, the freshwater mussel Anodonta anatina, to investigate how both the presence and abundance of 14 parasite taxa correlate with environmental drivers across 720 replicate parasite infracommunities. Using both redundancy analysis and a joint species distribution model, we model the impact of both host-level and environment-level characteristics on parasite structure, as well as parasite-parasite correlations after accounting for all other factors. We demonstrate that both niche- and neutral-based factors are important but to varying degrees across parasite species, suggesting that applying generalities to parasite community construction is too simplistic. Further, we show that presence-absence data fails to capture important density-dependent effects of parasite load for parasites with high abundance. Finally, we highlight that predicted parasite interaction networks vary greatly depending on whether abundance or presence-absence data is used. Our results emphasise the multi-faceted nature of parasite community assembly, and that future studies require careful consideration of the data used to infer community structure.


2018 ◽  
Author(s):  
J.F. Power ◽  
C.R. Carere ◽  
C.K. Lee ◽  
G.L.J. Wakerley ◽  
D.W. Evans ◽  
...  

Geothermal springs are model ecosystems to systematically investigate microbial biogeography as they i) represent discrete, homogenous habitats; ii) are abundantly distributed across multiple geographical scales; iii) span broad geochemical gradients; and iv) have simple community structures with reduced metazoan interactions. Taking advantage of these traits, we undertook the largest known consolidated study of geothermal ecosystems (http://1000springs.org.nz) to determine factors that influence biogeographical patterns. Rigorously standardised methodologies were used to measure microbial communities, 46 physicochemical parameters, and metadata from 1,019 hotspring samples across New Zealand. pH was found to be the primary influence on diversity in springs < 70 °C with community similarity decreasing with geographic distance. Surprisingly, community composition was dominated by two genera (VenenivibrioandAcidithiobacillus) in both average relative abundance (11.2 and 11.1 %) and prevalence (74.2 and 62.9 % respectively) across physicochemical spectrums of 13.9 – 100.6 °C and pH < 1 – 9.7. This study provides an unprecedented insight into the ecological conditions that drive community assembly in geothermal springs, and can be used as a foundation to improve the characterisation of global microbial biogeographical processes.


2020 ◽  
pp. 221-242
Author(s):  
T. Alex Perkins ◽  
Jason R. Rohr

Early theoretical developments in disease ecology overwhelmingly focused on interactions between a single pathogen and a single host. Today, it is well understood that numerous pathogens circulate among multiple host species, that some pathogens are comprised of many distinct strains, and that community ecology offers important perspectives for gaining insight into the inner workings of these complex ecological systems. Here, we focus on two topics that have received intense focus in theoretical investigations of multi-host and multi-pathogen systems, respectively. First, we review developments in a rather contentious debate around relationships between host diversity and disease. The current state of theory suggests that divergent views can be reconciled by considering where along a continuum of host diversity a given system lies, which is thought to affect how community assembly processes shape host species composition and overall abundance. Second, we review developments surrounding coexistence and other outcomes in communities of interacting pathogens. Ultimately, coexistence in pathogen communities can be explained by the same mechanisms that explain coexistence in any community, yet certain ways in which pathogens interact make the tailoring of theory specific to this context well justified. Despite a rich literature on host and pathogen diversity, there has been remarkably little theoretical work at their interface. To stimulate fresh developments to theories of diversity in disease ecology, we highlight aspects of ecological theory that may have been underutilized in theoretical work on host and pathogen diversity to date.


mBio ◽  
2017 ◽  
Vol 8 (3) ◽  
Author(s):  
Sophie E. Darch ◽  
Carolyn B. Ibberson ◽  
Marvin Whiteley

ABSTRACT Chronic polymicrobial infections are associated with increased virulence compared to monospecies infections. However, our understanding of microbial dynamics during polymicrobial infection is limited. A recent study by Limoli and colleagues (D. H. Limoli, G. B. Whitfield, T. Kitao, M. L. Ivey, M. R. Davis, Jr., et al., mBio 8:e00186-17, 2017, https://doi.org/10.1128/mBio.00186-17 !) provides insight into a mechanism that may contribute to the coexistence of Pseudomonas aeruginosa and Staphylococcus aureus in the cystic fibrosis (CF) lung. CF lung infections have frequently been used to investigate microbial interactions due to both the complex polymicrobial community and chronic nature of these infections. The hypothesis of Limoli et al. is that the conversion of P. aeruginosa to its mucoidy phenotype during chronic CF infection promotes coexistence by diminishing its ability to kill S. aureus. Highlighting a new facet of microbial interaction between two species that are traditionally thought of as competitors, this study provides a platform for studying community assembly in a relevant infection setting.


Ecology ◽  
2020 ◽  
Vol 101 (4) ◽  
Author(s):  
Nathan I. Wisnoski ◽  
Mario E. Muscarella ◽  
Megan L. Larsen ◽  
Ariane L. Peralta ◽  
Jay T. Lennon

2019 ◽  
Author(s):  
Nathan I. Wisnoski ◽  
Mario E. Muscarella ◽  
Megan L. Larsen ◽  
Ariane L. Peralta ◽  
Jay T. Lennon

ABSTRACTThe movement of organisms across habitat boundaries has important consequences for populations, communities, and ecosystems. However, because most species are not well adapted to all habitat types, dispersal into suboptimal habitats could induce physiological changes associated with persistence strategies that influence community assembly. For example, high rates of cross-boundary dispersal are thought to maintain sink populations of terrestrial bacteria in aquatic habitats, but these bacteria may also persist by lowering their metabolic activity, introducing metabolic heterogeneity that buffers the population against niche selection. To differentiate between these assembly processes, we analyzed bacterial composition along a hydrological flow path from terrestrial soils through an aquatic reservoir by sequencing the active and total (active + inactive) portions of the community. When metabolic heterogeneity was ignored, our data were consistent with views that cross-boundary dispersal is important for structuring aquatic bacterial communities. In contrast, we found evidence for strong niche selection when metabolic heterogeneity was explicitly considered, suggesting that, relative to persistence strategies, dispersal may have a weaker effect on aquatic community assembly than previously thought. By accounting for metabolic heterogeneity in complex communities, our findings clarify the roles of local- and regional-scale assembly processes in terrestrial-aquatic meta-ecosystems.


2019 ◽  
Author(s):  
Zhiyuan Li ◽  
Bo Liu ◽  
Sophia Hsin-Jung Li ◽  
Christopher G. King ◽  
Zemer Gitai ◽  
...  

ABSTRACTMicrobes face intense competition in the natural world, and so need to wisely allocate their resources to multiple functions, in particular to metabolism. Understanding competition among metabolic strategies that are subject to trade-offs is therefore crucial for deeper insight into the competition, cooperation, and community assembly of microorganisms. In this work, we evaluate competing metabolic strategies within an ecological context by considering not only how the environment influences cell growth, but also how microbes shape their chemical environment. Utilizing chemostat-based resource-competition models, we exhibit a set of intuitive and general procedures for assessing metabolic strategies. Using this framework, we are able to relate and unify multiple metabolic models, and to demonstrate how the fitness landscape of strategies becomes intrinsically dynamic due to species-environment feedback. Such dynamic fitness landscapes produce rich behaviors, and prove to be crucial for ecological and evolutionary stable coexistence in all the models we examined.


2019 ◽  
Vol 9 (24) ◽  
pp. 13752-13763 ◽  
Author(s):  
Evelyn C. Rynkiewicz ◽  
Andy Fenton ◽  
Amy B. Pedersen

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