Genetic variations and phylogenetic relationship of genus Uromastyx from Punjab Pakistan

During the present study, specimens were collected from selected sites of Cholistan desert and Kalabagh Game Reserve, Punjab province, Pakistan. Each captured specimen was tagged with voucher number and morphometric measurements were taken. The average snout to vent length was 172.559±1.40 mm and average weight was 92.1±1.30 g. The DNA of Uromastyx hardwickii was amplified and sequenced using 16S rRNA primer set. The obtained DNA sequence has shown reliable and clear species identification. After trimming ambiguous bases, the obtained 16S rRNA fragment was 520 bp while 16S rRNA fragments aligned with closely matched sequence from NCBI comprised of 510 bp. Closely matched sequences of genus Uromastyx were retrieved from NCBI in blast searches. Neighbour-joining tree of genus Uromastyx was constructed based on p-distance using MEGA X. The mean intraspecific variation was 0.095±0.01 while intraspecific variation was ranging from 0-1%. Similarly, interspecific variation of Uromastyx hardwikii with Saara asmussi, Uromastyx alfredschmidti, Uromastyx geyri, Uromastyx thomasi, Uromastyx alfredschmidti was 0-12%, 0-19%, 0-19%, 0-20%, 12-19% respectively. The newly produced DNA was submitted to NCBI and accession number was obtained (MW052563.1). Results of current study provided information about the molecular and morphological identification of Genus Uromastyx. In our recommendation, comprehensive molecular based identification of Pakistan’s reptiles is required to report any new or subspecies from country.

Climate warming may increase the frequency of cold-adapted haplotypes in alpine plants

Modelling of climate-driven range shifts commonly treats species as ecologically homogeneous units. However, many species show intraspecific variation of climatic niches and theory predicts that such variation may lead to counterintuitive eco-evolutionary dynamics. Here, we incorporate assumed intraspecific niche variation into a dynamic range model and explore possible consequences for six high-mountain plant species of the European Alps under scenarios of twenty-first century climate warming. At the species level, the results indicate massive range loss independent of intraspecific variation. At the intraspecific level, the model predicts a decrease in the frequency of warm-adapted haplotypes in five species. The latter effect is probably driven by a combination of leading-edge colonization and priority effects within the species’ elevational range and was weakest when leading-edge expansion was constrained by mountain topography The resulting maladaptation may additionally increase the risk that alpine plants face from shrinkage of their ranges in a warming climate.

Stink bug egg parasitoids (Hymenoptera, Scelionidae) associated with pistachio in Iran and description of a new species: Trissolcus darreh Talamas

Surveys for egg-parasitoid wasps were conducted in Rafsanjan, Iran, on two species of Pentatomidae (Hemiptera) found in pistachio orchards, Acrosternum arabicum Wagner and Brachynema signatum Jakovlev. Five species of Scelionidae (Platygastroidea) were recovered, including one that is here described as new: Psix saccharicola (Mani), Trissolcus colemani (Crawford), T. darreh Talamas sp. nov., T. perepelovi (Kozlov), and T. semistriatus (Nees). In addition to describing a new species, we report new host associations, provide COI barcodes for four of these species, and discuss host-related intraspecific variation in T. darreh and T. perepelovi.

Taxonomy, allometry, sexual dimorphism, and conservation of the trans-Andean water-snake Helicops danieli Amaral 1937 (Serpentes: Dipsadidae: Hydropsini).

The extensive lack of knowledge on the morphological aspects of South American water-snakes, includes a poor understanding of phenotypic parameters, intraspecific variation, and conservation of the trans-Andean Helicops species, Helicops danieli Amaral, 1937. For the first time, we provide a multidisciplinary view using key features (e.g., morphology and niche modeling) to improve the taxonomic recognition of this species, as well as describing ontogenetic color changes, allometry, sexual dimorphism, and the conservation status of this poorly studied snake. First, we emended the morphological diagnosis of H. danieli with 23 characters and detected that juvenile tail length is positively related to allometric growth, and that juveniles differ from adults through the presence of the white nuchal collar. Females are larger than males for snout-vent length, whereas males showed proportionally longer tails and smaller head length growth. Suitable areas for H. danieli are restricted to the trans-Andean regions from the Magdalena drainage to the Caribbean coast, which also showed high values of anthropic impacts. Our multidisciplinary approach provided new insights into this South American water snake’s morphology, intraspecific variation, and distribution.

Large ants are not easy – the taxonomy of Dinoponera Roger (Hymenoptera: Formicidae: Ponerinae)

The taxonomy of the giant ants of the genus Dinoponera is revised based on female and male morphology. Eight species are recognized. Dinoponera nicinha sp. nov., from Amazonas and Rondônia, Brazil, is described and D. grandis (Guérin-Méneville, 1838) is revived. The species D. australis Emery, 1901 and D. snellingi Lenhart, Dash & Mackay, 2013, plus the subspecies D. australis bucki Borgmeier, 1937 and D. australis nigricolor Borgmeier, 1937 are synonymized under D. grandis sp. rev. An unnamed and unidentified male is reported. In general, male morphology has greater and more discrete variation than in females, but they are scarce in museum collections. Species distributions are updated and illustrated, the genus ranging from southern Colombia to northern Argentina, with no reliable records from the Guiana Shield and all nominal species occurring in Brazil. Intraspecific variation and natural history are discussed. New illustrated identification keys are provided for both sexes. Future studies should address the collection of fresh specimens for molecular work and to assess the conservation status of several species and populations.

Combined Pan-, Population-, and Phylo-Genomic Analysis of Aspergillus fumigatus Reveals Population Structure and Lineage-Specific Diversity

Aspergillus fumigatus is a deadly agent of human fungal disease, where virulence heterogeneity is thought to be at least partially structured by genetic variation between strains. While population genomic analyses based on reference genome alignments offer valuable insights into how gene variants are distributed across populations, these approaches fail to capture intraspecific variation in genes absent from the reference genome. Pan-genomic analyses based on de novo assemblies offer a promising alternative to reference-based genomics, with the potential to address the full genetic repertoire of a species. Here, we use a combination of population genomics, phylogenomics, and pan-genomics to assess population structure and recombination frequency, phylogenetically structured gene presence-absence variation, evidence for metabolic specificity, and the distribution of putative antifungal resistance genes in A. fumigatus. We provide evidence for three distinct populations of A. fumigatus, structured by both gene variation (SNPs and indels) and distinct gene presence-absence variation with unique suites of accessory genes present exclusively in each clade. Accessory genes displayed functional enrichment for nitrogen and carbohydrate metabolism, hinting that populations may be stratified by environmental niche specialization. Similarly, the distribution of antifungal resistance genes and resistance alleles were often structured by phylogeny. Despite low levels of outcrossing, A. fumigatus demonstrated a large pan-genome including many genes unrepresented in the Af293 reference genome. These results highlight the inadequacy of relying on a single-reference genome based approach for evaluating intraspecific variation, and the power of combined genomic approaches to elucidate population structure, genetic diversity, and putative ecological drivers of clinically relevant fungi.

Pandora’s Box in the Deep Sea –Intraspecific Diversity Patterns and Distribution of Two Congeneric Scavenging Amphipods

Paralicella tenuipesChevreux, 1908 and Paralicella caperescaShulenberger and Barnard, 1976 are known as widely distributed deep-sea scavenging amphipods. Some recent studies based on genetic data indicated the presence of high intraspecific variation of P. caperesca suggesting it is a species complex. Based on published molecular data from the Pacific and Indian oceans and new material obtained from the North and South Atlantic, we integrated the knowledge on the intraspecific variation and species distribution of the two nominal taxa. The study included analysis of three genes (COI, 16S rRNA, 28S rRNA) and revealed the existence of a single Molecular Operational Taxonomic Unit (MOTU) within P. tenuipes and six different MOTUs forming P. caperesca. The distribution pattern of the recognized lineages varied with three (P. tenuipes, MOTU 1 and MOTU 5 of P. caperesca) being widely distributed. There was evidence of contemporary population connectivity expressed by the share of the same COI haplotypes by individuals from very distant localities. At the same time no signal of recent demographic changes was observed within the studied taxa. The time-calibrated phylogeny suggested the emergence of species to be at the time of Mesozoic/Cenozoic transition that may be associated with global changes of the ocean circulation and deep sea water cooling.

Lower Levels of Vestibular Developmental Stability in Slow-Moving than Fast-Moving Primates

The vestibular system of the mammalian inner ear senses angular and linear velocity of the head and enables animals to maintain their balance. Vestibular anatomy has been studied extensively in order to link its structure to particular kinds of locomotion. Available evidence indicates that, in primates, slow-moving species show higher levels of vestibular variation than fast-moving taxa. We analysed intraspecific morphological variation and fluctuating asymmetry (FA) levels in the semicircular canal systems of six species of lorisiform primates: three slow-moving lorisids and three fast-moving galagids. Our results showed clear differences in levels of intraspecific variation between slow-moving and fast-moving taxa. Higher levels of variation were responsible for deviations from coplanarity for synergistic pairs of canals in slower taxa. Lorisids also presented higher levels of FA than galagids. FA is a better indicator of agility than intraspecific variation. These results suggest that in order to function efficiently in fast taxa, semicircular canal systems must develop as symmetrically as possible, and should minimise the deviation from coplanarity for synergistic pairs. Higher levels of variation and asymmetry in slow-moving taxa may be related to lower levels of stabilising selection on the vestibular system, linked to a lower demand for rapid postural changes.