scholarly journals Culture‐dependent and culture‐independent characterization of potentially functional biphenyl‐degrading bacterial community in response to extracellular organic matter from M icrococcus luteus

2015 ◽  
Vol 8 (3) ◽  
pp. 569-578 ◽  
Author(s):  
Xiao‐Mei Su ◽  
Yin‐Dong Liu ◽  
Muhammad Zaffar Hashmi ◽  
Lin‐Xian Ding ◽  
Chao‐Feng Shen
Acta Tropica ◽  
2010 ◽  
Vol 115 (3) ◽  
pp. 275-281 ◽  
Author(s):  
Desiely S. Gusmão ◽  
Adão V. Santos ◽  
Danyelle C. Marini ◽  
Mauricio Bacci ◽  
Marília A. Berbert-Molina ◽  
...  

2021 ◽  
Vol 14 (1) ◽  
Author(s):  
L. Paulina Maldonado-Ruiz ◽  
Saraswoti Neupane ◽  
Yoonseong Park ◽  
Ludek Zurek

Abstract Background The lone star tick (Amblyomma americanum), an important vector of a wide range of human and animal pathogens, is very common throughout the East and Midwest of the USA. Ticks are known to carry non-pathogenic bacteria that may play a role in their vector competence for pathogens. Several previous studies using the high throughput sequencing (HTS) technologies reported the commensal bacteria in a tick midgut as abundant and diverse. In contrast, in our preliminary survey of the field collected adult lone star ticks, we found the number of culturable/viable bacteria very low. Methods We aimed to analyze the bacterial community of A. americanum by a parallel culture-dependent and a culture-independent approach applied to individual ticks. Results We analyzed 94 adult females collected in eastern Kansas and found that 60.8% of ticks had no culturable bacteria and the remaining ticks carried only 67.7 ± 42.8 colony-forming units (CFUs)/tick representing 26 genera. HTS of the 16S rRNA gene resulted in a total of 32 operational taxonomic units (OTUs) with the dominant endosymbiotic genera Coxiella and Rickettsia (> 95%). Remaining OTUs with very low abundance were typical soil bacterial taxa indicating their environmental origin. Conclusions No correlation was found between the CFU abundance and the relative abundance from the culture-independent approach. This suggests that many culturable taxa detected by HTS but not by culture-dependent method were not viable or were not in their culturable state. Overall, our HTS results show that the midgut bacterial community of A. americanum is very poor without a core microbiome and the majority of bacteria are endosymbiotic.


2020 ◽  
Vol 23 (3) ◽  
pp. 480-488
Author(s):  
Stacey LaFrentz ◽  
Eva Abarca ◽  
Haitham H. Mohammed ◽  
Rosemary Cuming ◽  
Covadonga R. Arias

2015 ◽  
Vol 05 (13) ◽  
pp. 842-857 ◽  
Author(s):  
Karen Olsson-Francis ◽  
Carl P. Boardman ◽  
Victoria K. Pearson ◽  
Paul F. Schofield ◽  
Anna Oliver ◽  
...  

2008 ◽  
Vol 74 (19) ◽  
pp. 6151-6154 ◽  
Author(s):  
Alison S. Laufer ◽  
Mark E. Siddall ◽  
Joerg Graf

ABSTRACT FDA-approved, postoperative use of leeches can lead to bacterial infections. In this study, we used culture-dependent and culture-independent approaches to characterize the digestive-tract microbiota of Hirudo orientalis. Surprisingly, two Aeromonas species, A. veronii and A. jandaei, were cultured. Uncultured Rikenella-like bacteria were most similar to isolates from Hirudo verbana.


2017 ◽  
Vol 66 (2) ◽  
pp. 149-153 ◽  
Author(s):  
Shirali Pandya ◽  
Kavitha Ravi ◽  
Vijaya Srinivas ◽  
Smitha Jadhav ◽  
Anisa Khan ◽  
...  

2018 ◽  
Vol 64 (8) ◽  
pp. 567-579 ◽  
Author(s):  
Salma Mukhtar ◽  
Samina Mehnaz ◽  
Muhammad Sajjad Mirza ◽  
Babur Saeed Mirza ◽  
Kauser Abdulla Malik

Salinity is one of the major abiotic stresses; a total of 3% of the world’s land mass is affected by salinity. Approximately 6.3 million hectares of land in Pakistan is affected by salinity to varying degrees, and most of the areas are arid to semiarid with low annual precipitation. The aim of the present study is to identify and characterize Bacillus and Bacillus-derived bacterial genera from the rhizospheric and non-rhizospheric soil samples from the Khewra Salt Mine, Pakistan, by using culture-independent and -dependent methods. Seven Bacillus-like bacterial genera, Bacillus, Halobacillus, Virgibacillus, Brevibacillus, Paenibacillus, Tumebacillus, and Lysinibacillus, were detected by using pyrosequencing analysis, whereas only four genera, Bacillus, Halobacillus, Oceanobacillus, and Virgibacillus, were identified by culture-dependent methods. Most of the Bacillus-like isolates identified in this study were moderately halophilic, alkaliphilic, and mesophilic bacteria and were considered a good source of hydrolytic enzymes because of their ability to degrade proteins, carbohydrates, and lipids. Eight Bacillus-like strains from the genera Bacillus, Halobacillus, Oceanobacillus, and Virgibacillus showed positive results for the presence of ectABC gene cluster (ectoine), six strains could synthesize betaine from choline, and six strains tested positive for the synthesis of proline from either glutamate or ornithine by using proline dehydrogenase enzyme.


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