A model-based solution for observational errors in laboratory studies

2018 ◽  
Vol 18 (3) ◽  
pp. 580-589 ◽  
Author(s):  
Brian M. Brost ◽  
Brittany A. Mosher ◽  
Kristen A. Davenport

This chapter studies how modeling supports empirical research. The benefit of integrating modeling and empirical research has long been recognized: theorists and modelers pose hypotheses that empirical researchers then design studies to test, and empirical research informs the development of new hypotheses. Such integration may be particularly valuable in frameworks that include multiple levels of organization, from individuals to populations to communities. But does working across levels of organization change the relationships of theory, modeling, and empirical research? What kinds of field and laboratory studies do we need, and at what levels of organization, to support modeling? The chapter assesses these questions. Thinking about the relation between modeling and empirical research requires one to address the entire process of model-based research, which is usefully characterized as a modeling cycle. The chapter then explores how the kind of modeling and theory development presented in this book can contribute to empirical studies and research.


Author(s):  
Minna Tiainen ◽  
Heidi Pietilä ◽  
Sanna Tyni

In this study, the first-year chemistry laboratory course was renewed and made more intensive, three weeks course. Students’ experiences of the renewed course were examined by analyzing their learning diaries which they were encouraged to keep during the whole course. The purpose of this study was to find out how the intense coursework affects students’ emotions and learning experiences. Thus, the learning diaries were analyzed in order to find out different emotions that students experienced during the course. These emotions were then classified and represented using a model based on a two-dimensional emotion theory. Diversity of students’ emotions during the course gave us important information how emotions influenced on student’s learning and achievement. For teacher it is valuable to understand and deal with the emotions experienced by students while planning and carrying out the laboratory course. This enables not only higher quality teaching, but also more positive learning outcomes for students regarding their chemistry laboratory studies. FULL TEXT IN FINNISH.


2020 ◽  
Vol 43 ◽  
Author(s):  
Peter Dayan

Abstract Bayesian decision theory provides a simple formal elucidation of some of the ways that representation and representational abstraction are involved with, and exploit, both prediction and its rather distant cousin, predictive coding. Both model-free and model-based methods are involved.


1997 ◽  
Vol 161 ◽  
pp. 179-187
Author(s):  
Clifford N. Matthews ◽  
Rose A. Pesce-Rodriguez ◽  
Shirley A. Liebman

AbstractHydrogen cyanide polymers – heterogeneous solids ranging in color from yellow to orange to brown to black – may be among the organic macromolecules most readily formed within the Solar System. The non-volatile black crust of comet Halley, for example, as well as the extensive orangebrown streaks in the atmosphere of Jupiter, might consist largely of such polymers synthesized from HCN formed by photolysis of methane and ammonia, the color observed depending on the concentration of HCN involved. Laboratory studies of these ubiquitous compounds point to the presence of polyamidine structures synthesized directly from hydrogen cyanide. These would be converted by water to polypeptides which can be further hydrolyzed to α-amino acids. Black polymers and multimers with conjugated ladder structures derived from HCN could also be formed and might well be the source of the many nitrogen heterocycles, adenine included, observed after pyrolysis. The dark brown color arising from the impacts of comet P/Shoemaker-Levy 9 on Jupiter might therefore be mainly caused by the presence of HCN polymers, whether originally present, deposited by the impactor or synthesized directly from HCN. Spectroscopic detection of these predicted macromolecules and their hydrolytic and pyrolytic by-products would strengthen significantly the hypothesis that cyanide polymerization is a preferred pathway for prebiotic and extraterrestrial chemistry.


2001 ◽  
Vol 7 (S2) ◽  
pp. 578-579
Author(s):  
David W. Knowles ◽  
Sophie A. Lelièvre ◽  
Carlos Ortiz de Solόrzano ◽  
Stephen J. Lockett ◽  
Mina J. Bissell ◽  
...  

The extracellular matrix (ECM) plays a critical role in directing cell behaviour and morphogenesis by regulating gene expression and nuclear organization. Using non-malignant (S1) human mammary epithelial cells (HMECs), it was previously shown that ECM-induced morphogenesis is accompanied by the redistribution of nuclear mitotic apparatus (NuMA) protein from a diffuse pattern in proliferating cells, to a multi-focal pattern as HMECs growth arrested and completed morphogenesis . A process taking 10 to 14 days.To further investigate the link between NuMA distribution and the growth stage of HMECs, we have investigated the distribution of NuMA in non-malignant S1 cells and their malignant, T4, counter-part using a novel model-based image analysis technique. This technique, based on a multi-scale Gaussian blur analysis (Figure 1), quantifies the size of punctate features in an image. Cells were cultured in the presence and absence of a reconstituted basement membrane (rBM) and imaged in 3D using confocal microscopy, for fluorescently labeled monoclonal antibodies to NuMA (fαNuMA) and fluorescently labeled total DNA.


Author(s):  
Charles Bouveyron ◽  
Gilles Celeux ◽  
T. Brendan Murphy ◽  
Adrian E. Raftery

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