scholarly journals A comparison of pedigree, genetic and genomic estimates of relatedness for informing pairing decisions in two critically endangered birds: Implications for conservation breeding programmes worldwide

2020 ◽  
Vol 13 (5) ◽  
pp. 991-1008 ◽  
Author(s):  
Stephanie J. Galla ◽  
Roger Moraga ◽  
Liz Brown ◽  
Simone Cleland ◽  
Marc P. Hoeppner ◽  
...  
2019 ◽  
Author(s):  
Stephanie Galla ◽  
Roger Moraga ◽  
Liz Brown ◽  
Simone Cleland ◽  
Marc P. Hoeppner ◽  
...  

AbstractConservation management strategies for many highly threatened species include conservation breeding to prevent extinction and enhance recovery. Pairing decisions for these conservation breeding programmes can be informed by pedigree data to minimise relatedness between individuals in an effort to avoid inbreeding, maximise diversity, and maintain evolutionary potential. However, conservation breeding programmes struggle to use this approach when pedigrees are shallow or incomplete. While genetic data (i.e., microsatellites) can be used to estimate relatedness to inform pairing decisions, emerging evidence indicates this approach lacks precision in genetically depauperate species, and more effective estimates will likely be obtained from genomic data (i.e., thousands of genome-wide single nucleotide polymorphisms, or SNPs). Here, we compare relatedness estimates using pedigree-, genetic-, and genomic-based approaches for making pairing decisions in two critically endangered birds endemic to New Zealand: kakī/black stilt (Himantopus novaezelandiae) and kākāriki karaka/orange-fronted parakeet (Cyanoramphus malherbi). Our findings indicate genetic-based estimates of relatedness are indeed the least precise when assessing known parent-offspring and full sibling relationships. Furthermore, our results show that relatedness estimates and subsequent pairing recommendations using PMx are most similar between pedigree- and genomic-based approaches. These combined results indicate that in lieu of robust pedigrees, SNPs are an effective tool for informing pairing decisions, which has exciting implications for many poorly pedigreed conservation breeding programmes worldwide.


2021 ◽  
pp. 24-27
Author(s):  
Jay Redbond

The Nguru spiny pygmy chameleon (Rhampholeon acuminatus) is endemic to the Nguru mountains in Tanzania. It is assessed as Critically Endangered and is collected from the wild for the pet trade. An ex-situ population of this species was recently established at The Wild Planet Trust, Paignton Zoo, in the hope of learning more about the husbandry and biology of this species. We report on the captive husbandry of adults and the successful breeding, hatching and rearing of juveniles. Females carried four eggs but laid them in pairs. When eggs were incubated at 19.2-22.8 °C, hatchlings emerged roughly 180 days after laying. The hatchlings had a total length of about 30 mm and weighed 0.2-0.3 g. To our knowledge, this is the first published account of captive breeding for this species. The husbandry methods described could be used to establish populations of this and other Rhampholeon species in captivity, which in turn would reduce the demand for wild caught (Rhampholeon), as well as inform future conservation breeding programmes for this species.


2015 ◽  
Vol 24 (11) ◽  
pp. 2625-2646 ◽  
Author(s):  
Benjamin Tapley ◽  
Kay S. Bradfield ◽  
Christopher Michaels ◽  
Mike Bungard

2010 ◽  
Vol 45 (1) ◽  
pp. 203-212 ◽  
Author(s):  
C. S. ASA ◽  
K. TRAYLOR-HOLZER ◽  
R. C. LACY

2021 ◽  
pp. 119-136
Author(s):  
Paul A. Rees

Abstract This chapter contains questions on the role of zoos in conservation (captive) breeding programmes and the technologies that have been developed to assist in the reproduction of rare species.


2021 ◽  
Vol 13 (6) ◽  
pp. 18544-18550
Author(s):  
Nillanjan Mallick ◽  
Shailendra Singh ◽  
Dibyadeep Chatterjee ◽  
Souritra Sharma

The population of Northern River Terrapin Batagur baska is ‘Critically Endangered’ and threatened with extinction.  In India, the species was once known to occur in the mangroves of West Bengal and Odisha.  The sub-population in Odisha is suspected to have been wiped out.  The Sundarban Tiger Reserve and the Turtle Survival Alliance launched a modest conservation breeding program in 2012 to recover the species using a small number of adults as founders.  Gravid adult females are kept in a dedicated breeding enclosure with minimal disturbance, eggs are incubated outdoor on an artificial nesting beach, and hatchlings are raised to develop assurance colonies for purposes of reintroduction in future.  Currently, the project holds 12 adults and over 350 juveniles of various size classes.  Three additional assurance colonies were developed for 70 sub-adults from 2012–13 batches, using rain-fed ponds within STR. 


Author(s):  
Natalie E. Calatayud ◽  
Talisin T. Hammond ◽  
Nicole R. Gardner ◽  
Michelle J. Curtis ◽  
Ronald R Swaisgood ◽  
...  

2021 ◽  
Vol 2 ◽  
Author(s):  
Shannon R. Kelleher ◽  
Aimee J. Silla ◽  
Anne G. Hertel ◽  
Niels J. Dingemanse ◽  
Phillip G. Byrne

Variation in female mate preferences for male traits remains poorly understood (both among and within females), despite having important evolutionary and conservation implications, particularly for captive breeding. Here, we investigate female mate preferences for male advertisement call frequency, and determine whether preferences vary over repeated trials, in the critically endangered southern corroboree frog, Pseudophryne corroboree. We conducted a series of phonotaxis trials in a six-speaker arena where naïve, captive-bred, virgin females were offered a choice between low, average and high frequency male advertisement calls, with a subset of females tested repeatedly. In the first trial, we found no evidence for a population-level preference for call frequency, but females spent less time in the low call zone than expected by chance. However, our results showed that female mate preferences changed over sequential trials. Females spent significantly more time in the low frequency call zone in the third trial compared to the first trial, and, in the last trial, females exhibited a significant population-level preference for low frequency calls. Subsequently, repeatability estimates of female preferences were low and did not significantly deviate from zero. Our results indicate that female P. corroboree mate preferences can exhibit temporal variation, and suggest that females are more attracted to low call frequencies after repeated exposure. These findings imply that female P. corroboree may become choosier over time, and highlight the potential for mate preferences to exhibit phenotypic plasticity within a single reproductive cycle. Overall, these findings provide the first information on mate preferences in P. corroboree, and emphasize the importance of considering individual variation in mate choice studies. From a conservation perspective, knowledge of individual variation in female mate preferences may be used to conduct behavioral manipulations in captivity that facilitate the breeding of genetically valuable individuals, and improve the success of conservation breeding programs.


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