The RNA polymerase subunits E/F from the Antarctic archaeon Methanococcoides burtonii bind to specific species of mRNA

2010 ◽  
Vol 13 (8) ◽  
pp. 2039-2055 ◽  
Author(s):  
Davide De Francisci ◽  
Stefano Campanaro ◽  
Geoff Kornfeld ◽  
Khawar S. Siddiqui ◽  
Timothy J. Williams ◽  
...  
2006 ◽  
Vol 81 (3) ◽  
pp. 1339-1349 ◽  
Author(s):  
Tadasuke Naito ◽  
Fumitaka Momose ◽  
Atsushi Kawaguchi ◽  
Kyosuke Nagata

ABSTRACT Transcription and replication of the influenza virus RNA genome occur in the nuclei of infected cells through the viral RNA-dependent RNA polymerase consisting of PB1, PB2, and PA. We previously identified a host factor designated RAF-1 (RNA polymerase activating factor 1) that stimulates viral RNA synthesis. RAF-1 is found to be identical to Hsp90. Here, we examined the intracellular localization of Hsp90 and viral RNA polymerase subunits and their molecular interaction. Hsp90 was found to interact with PB2 and PB1, and it was relocalized to the nucleus upon viral infection. We found that the nuclear transport of Hsp90 occurs in cells expressing PB2 alone. The nuclear transport of Hsp90 was in parallel with that of the viral RNA polymerase binary complexes, either PB1 and PB2 or PB1 and PA, as well as with that of PB2 alone. Hsp90 also interacted with the binary RNA polymerase complex PB1-PB2, and it was dissociated from the PB1-PB2 complex upon its association with PA. Furthermore, Hsp90 could form a stable PB1-PB2-Hsp90 complex prior to the formation of a ternary polymerase complex by the assembly of PA in the infected cells. These results suggest that Hsp90 is involved in the assembly and nuclear transport of viral RNA polymerase subunits, possibly as a molecular chaperone for the polymerase subunits prior to the formation of a mature ternary polymerase complex.


2008 ◽  
Vol 70 (3) ◽  
pp. 623-633 ◽  
Author(s):  
Akira Hirata ◽  
Tamotsu Kanai ◽  
Thomas J. Santangelo ◽  
Momoko Tajiri ◽  
Kenji Manabe ◽  
...  

1974 ◽  
Vol 131 (2) ◽  
pp. 173-180 ◽  
Author(s):  
Richard S. Hayward ◽  
Stuart J. Austin ◽  
John G. Scaife

1976 ◽  
Vol 143 (3) ◽  
pp. 297-299 ◽  
Author(s):  
Frode Engbaek ◽  
Carol Gross ◽  
Richard R. Burgess

2007 ◽  
Vol 18 (4) ◽  
pp. 1293-1301 ◽  
Author(s):  
Sara Devaux ◽  
Steven Kelly ◽  
Laurence Lecordier ◽  
Bill Wickstead ◽  
David Perez-Morga ◽  
...  

Eukaryotic nuclei contain three classes of multisubunit DNA-directed RNA polymerase. At the core of each complex is a set of 12 highly conserved subunits of which five—RPB5, RPB6, RPB8, RPB10, and RPB12—are thought to be common to all three polymerase classes. Here, we show that four distantly related eukaryotic lineages (the higher plant and three protistan) have independently expanded their repertoire of RPB5 and RPB6 subunits. Using the protozoan parasite Trypanosoma brucei as a model organism, we demonstrate that these distinct RPB5 and RPB6 subunits localize to discrete subnuclear compartments and form part of different polymerase complexes. We further show that RNA interference-mediated depletion of these discrete subunits abolishes class-specific transcription and hence demonstrates complex specialization and diversification of function by conventionally shared subunit groups.


mSystems ◽  
2020 ◽  
Vol 5 (5) ◽  
Author(s):  
Qing Zhang ◽  
Elisa Brambilla ◽  
Rui Li ◽  
Hualin Shi ◽  
Marco Cosentino Lagomarsino ◽  
...  

Exposure of bacteria to sublethal concentrations of antibiotics can lead to bacterial adaptation and survival at higher doses of inhibitors, which in turn can lead to the emergence of antibiotic resistance. The presence of sublethal concentrations of antibiotics targeting translation results in an increase in the amount of ribosomes per cell but nonetheless a decrease in the cells’ growth rate. In this work, we have found that inhibition of ribosome activity can result in a decrease in the amount of free RNA polymerase available for transcription, thus limiting the protein expression rate via a different pathway than what was expected. This result can be explained by our observation that long genes, such as those coding for RNA polymerase subunits, have a higher probability of premature translation termination in the presence of ribosome inhibitors, while expression of short ribosomal genes is affected less, consistent with their increased concentration.


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