AbstractIncreasing whole plant water use efficiency (yield per transpiration; WUEplant) through plant breeding can benefit the sustainability of agriculture and improve crop yield under drought. To select for WUEplant, an efficient phenotyping method that reports on the genetic contribution of component traits such as transpiration efficiency (TEi; rate of CO2 assimilation per stomatal conductance) must be developed. Leaf carbon stable isotope composition (δ13Cleaf) has been proposed as a high-throughput proxy for TEi, and a negative correlation between δ13Cleaf and both WUEplant and TEi has previously been demonstrated in several C4 grass species. Therefore, the aim of the research presented here was to determine if the same loci control δ13Cleaf, WUEplant, and TEi under well-watered and water-limited conditions in a recombinant inbred line (RIL) population of closely related C4 grasses Setaria viridis and S. italica. Three quantitative trait loci (QTL) for δ13Cleaf were co-localized with transpiration, biomass, and a linear model of WUE. When WUEplant was calculated for allele classes based on the three QTL for δ13Cleaf, δ13Cleaf was negatively correlated with WUEplant as theory predicts when WUEplant is in part driven by differences in TEi. In any population, multiple traits can influence WUEplant; however, the analysis of δ13Cleaf in this RIL population demonstrates that there is genetic control of TEi that significantly contributes to WUEplant. Furthermore, this research suggests that δ13Cleaf can be used in marker-assisted breeding to select for TEi and as a tool to better understand the physiology and genetic architecture of TEi and WUEplant in C4 species.Significance StatementOverextended water resources and drought are major agricultural problems worldwide. Therefore, selection for increased plant water use efficiency (WUEplant) in food and biofuel crop species is an important trait in plant breeding programs. Leaf carbon isotopic composition (δ13Cleaf) has potential as a rapid and effective high throughput phenotyping method for intrinsic transpiration efficiency (TEi), an important leaf-level component trait of WUEplant. Our research shows that δ13Cleaf and WUEplant share a common genetic architecture through their shared relationship with TEi. This suggests that δ13Cleaf can be used as a screen for TEi in marker-assisted plant breeding programs to improve crop drought resistance and decrease agricultural water consumption.
A genetic link between leaf carbon isotope composition and whole‐plant water use efficiency in the C
4
grass
Setaria
