Genome-wide analysis and expression profiles of PdeMYB transcription factors in colored-leaf poplar (Populus deltoids)

Background MYB transcription factors, comprising one of the largest transcription factor families in plants, play many roles in secondary metabolism, especially in anthocyanin biosynthesis. However, the functions of the PdeMYB transcription factor in colored-leaf poplar remain elusive. Results In the present study, genome-wide characterization of the PdeMYB genes in colored-leaf poplar (Populus deltoids) was conducted. A total of 302 PdeMYB transcription factors were identified, including 183 R2R3-MYB, five R1R2R3-MYB, one 4R-MYB, and 113 1R-MYB transcription factor genes. Genomic localization and paralogs of PdeMYB genes mapped 289 genes on 19 chromosomes, with collinearity relationships among genes. The conserved domain, gene structure, and evolutionary relationships of the PdeMYB genes were also established and analyzed. The expression levels of PdeMYB genes were obtained from previous data in green leaf poplar (L2025) and colored leaf poplar (QHP) as well as our own qRT-PCR analysis data in green leaf poplar (L2025) and colored leaf poplar (CHP), which provide valuable clues for further functional characterization of PdeMYB genes. Conclusions The above results provide not only comprehensive insights into the structure and functions of PdeMYB genes but also provide candidate genes for the future improvement of leaf colorization in Populus deltoids.

Molecular Cloning, Transcriptional Profiling, Subcellular Localization, and miRNA-Binding Site Analysis of Six SCL9 Genes in Poplar

The SCL9 subfamily is a key member of the GRAS family that regulates plant development and stress responses. Nevertheless, the functional role of these genes in the growth and development of poplar still unclear. Here, we reported the six SCL9 genes, which were found to be differentially expressed during poplar adventitious root formation. The full-length sequences of PeSCL9 genes of ‘Nanlin895’ poplar (Populus deltoids × Populus euramericana) were cloned by the RACE technique All PeSCL9 genes lacked introns. RT-qPCR revealed that PeSCL9 genes displayed a dynamic expression pattern in the adventitious root of poplar, according to RT-qPCR data. A series of comprehensive genes characteristics analysis were carried out for six genes by bioinformation. Meanwhile, transient expression analysis of the Populus protoplasts showed that all the PeSCL9 proteins were localized in the nucleus. In addition, the degradome and sRNA of ‘Nanlin895’ poplar in combination were used to predict miRNAs that regulate PeSCL9. It was found that miR396a and miR396c may affect PeSCL9 expression via cleavage, which was further verified by a transient expression experiment in Populus protoplasts. Overall, the development of poplar adventitious root and other tissues was closely related to these six SCL9 genes, and they serve as a starting point for further research into the mechanisms regulating poplar growth and development.

Nutrient resorption and stoichiometric responses of poplar (Populus deltoids) plantations to N addition in a coastal region of eastern China

Aims Leaf nutrient resorption is sensitive to changes in soil nutrients. However, the effects of N deposition on nutrient resorption efficiency (NuRE) in plant macro-nutrients remain unclear. Poplar (Populus deltoids) is one of the most extensively cultivated hardwood species worldwide. We explored general patterns and dominant drivers of NuRE and stoichiometry of poplar plantations in response to N addition. Methods We conducted a 4-year N-addition experiment to explore NuRE and stoichiometric responses to N addition in two poplar (Populus deltoids) plantations (8- and 12-year-old stands) in a coastal region of eastern China. We measured soil and foliar (green and senesced leaves) concentrations of nitrogen (N), phosphorus (P), potassium (K), calcium (Ca), and magnesium (Mg) for a series of N addition treatments including N0 (0 kg N ha ‒1 yr ‒1), N1 (50 kg N ha ‒1 yr ‒1), N2 (100 kg N ha ‒1 yr ‒1), N3 (150 kg N ha ‒1 yr ‒1), and N4 (300 kg N ha ‒1 yr ‒1). Important Findings Consistent for (both) 8- and 12-year-old stands, N addition did not affect the NuRE and stoichiometry (with the exception of CaRE and CaRE:MgRE ratio). NRE-PRE scaling slopes were consistently less than 1.0 under N addition. These results suggest that NRE generally decouples from PRE within each N treatment. Moreover, these results point to robust control of green leaf nutritional status on nutrient resorption processes as indicated by the positive relationships between nutrient resorption efficiency and green leaf nutrient concentrations. Our findings provided a direct evidence that growth in 12-year-old poplar plantations was N-limited in a coastal region of eastern China.

Effect of short-rotation trees on nutrient dynamics and rooting pattern in intercropped with aromatic grasses in terai of U.P.

An Experiment was conducted in District Pilibhit.U.P., to study the yields of aromatic grasses in pure fields as well as intercrops under Populus deltoids and Eucalyptus hybrid. Quantity of litterfall, its chemical composition, nutrient addition, changes in chemical constituents of soil and herb and oil yield of Cymbopogon spp. were studied under agroforestry systems involving Populus deltoids and Eucalyptus hybrid with intercrop of Aromatic grasses (C.winterianus, C.martinii, C.flexouses). Trees were intercropped with grasses have significantly more diameter and height in comparison to trees planted without intercrops. High herbage and oil yield was recorded in pure fields of grasses than their crops intercropped with trees. Maximum yield was produced by Palmarosa and minimum by Citronella in poplar plantation intercropped. In Eucalyptus hybrid intercropped grasses, maximum oil yield was produced by Lemon grass and minimum by Palmarosa. Higher quantity of litter was produced in Palmarosa and lower was produced in Citronella intercropped trees. The litter produced by the intercropped stands had higher NPK contents than pure stands. The concentration of nutrients in the litter decreased with increasing age of the stands. Similarly, the total addition of nutrients (NPK) through litter fall to the soil increased as the age of trees increased. In the field of trees intercropped with Palmarosa was maximum addition of nutrients, while in Citronella intercropped field it was seen minimum. In comparison to intercropped stands, available NPK content of soil was higher in pure stands of trees. Maximum amount of N and K was found in superficial layer of the soil, which decreased with increasing depth. Most of the phosphorus was accumulated in the soil at the depth of 15-30cm in all the stands. The concentration of roots was more near the base of the trees at juvenile age,but as the age increases the roots tended to proliferates uniformly.. The total root biomass decreased continuously with increasing soil depth at all the radial distances and under all the age groups. It is clear that there is no completion among the root system with roots of intercrops grown along with Poplar and Eucalyptus.

Fine Root Biomass Mediates Soil Fauna Community in Response to Nitrogen Addition in Poplar Plantations (Populus deltoids) on the East Coast of China

Soil fauna is critical for maintaining ecosystem functioning, and its community could be significantly impacted by nitrogen (N) deposition. However, our knowledge of how soil-faunal community composition responds to N addition is still limited. In this study, we simulated N deposition (0, 50, 100, 150, and 300 kg N ha−1 year−1) to explore the effects of N addition on the total and the phytophagous soil fauna along the soil profile (0–10, 10–25, and 25–40 cm) in poplar plantations (Populus deltoids) on the east coast of China. Ammonium nitrate (NH4NO3) was dissolved in water and sprayed evenly under the canopy with a backpack sprayer to simulate N deposition. Our results showed that N addition either significantly increased or decreased the density (D) of both the total and the phytophagous soil fauna (Dtotal and Dp) at low or high N addition rates, respectively, indicating the existence of threshold effects over the range of N addition. However, N addition had no significant impacts on the number of groups (G) and diversity (H) of either the total or the phytophagous soil fauna (Gtotal, Gp and Htotal, Hp). With increasing soil depth, Dtotal, Dp, Gtotal, and Gp largely decreased, showing that the soil fauna have a propensity to aggregate at the soil surface. Htotal and Hp did not significantly vary along the soil profile. Importantly, the threshold effects of N addition on Dtotal and Dp increased from 50 and 100 to 150 kg N ha−1 year−1 along the soil profile. Fine root biomass was the dominant factor mediating variations in Dtotal and Dp. Our results suggested that N addition may drive changes in soil-faunal community composition by altering belowground food resources in poplar plantations.