Deep learning for coronary artery segmentation in x-ray angiograms using a patch-based training

Author(s):  
Fernando Cervantes-Sanchez ◽  
Ivan Cruz-Aceves ◽  
Arturo Hernandez-Aguirre ◽  
Martha Alicia Hernandez-González ◽  
Sergio Eduardo Solorio-Meza
2021 ◽  
Author(s):  
Caixia Dong ◽  
Songhua Xu ◽  
Zongfang Li

BACKGROUND Coronary computed tomographic angiography (CCTA) plays a vital role in the diagnosis of cardiovascular diseases, among which automatic Coronary Artery Segmentation (CAS) serves as one of the most challenging tasks. To computationally assist the task, this paper proposes a novel DL solution. OBJECTIVE This study introduces an end-to-end novel deep learning-based (DL) solution for automatic CAS. METHODS Inspired by the Di-Vnet network, a fully automatic multistage DL solution is proposed. The new solution aims to preserve the integrity of blood vessels in terms of both their shape details and continuity. The solution is developed using 338 CCTA cases, among which 133 cases (33865 axial images) have their groundtruth cardiac masks pre-annotated and 205 cases (53365 axial images) have their groundtruth coronary artery (CA) masks pre-annotated. DSC and 95% HD scores are used to measure the solution’s accuracy in CAS. RESULTS The proposed solution attains (90.29±1.38) % in its DSC and (2.11±0.24) mm in its 95% HD respectively, which consumes 0.112 seconds per image and 30 seconds per case on average. CONCLUSIONS The proposed solution attains (90.29±1.38) % in its DSC and (2.11±0.24) mm in its 95% HD respectively, which consumes 0.112 seconds per image and 30 seconds per case on average.


2020 ◽  
pp. paper75-1-paper75-11
Author(s):  
Viacheslav Danilov ◽  
Olga Gerget ◽  
Kirill Klyshnikov ◽  
Evgeny Ovcharenko ◽  
Alejandro Frangi

The article explores the application of machine learning approach to detect both single-vessel and multivessel coronary artery disease from X-ray angiography. Since the interpretation of coronary angiography images requires interventional cardiologists to have considerable training, our study is aimed at analysing, training, and assessing the potential of the existing object detectors for classifying and detecting coronary artery stenosis using angiographic imaging series. 100 patients who underwent coronary angiography at the Research Institute for Complex Issues of Cardiovascular Diseases were retrospectively enrolled in the study. To automate the medical data analysis, we examined and compared three models (SSD MobileNet V1, Faster-RCNN ResNet-50 V1, FasterRCNN NASNet) with various architecture, network complexity, and a number of weights. To compare developed deep learning models, we used the mean Average Precision (mAP) metric, training time, and inference time. Testing results show that the training/inference time is directly proportional to the model complexity. Thus, Faster-RCNN NASNet demonstrates the slowest inference time. Its mean inference time per one image made up 880 ms. In terms of accuracy, FasterRCNN ResNet-50 V1 demonstrates the highest prediction accuracy. This model has reached the mAP metric of 0.92 on the validation dataset. SSD MobileNet V1 has demonstrated the best inference time with the inference rate of 23 frames per second.


IEEE Access ◽  
2018 ◽  
Vol 6 ◽  
pp. 44635-44643 ◽  
Author(s):  
Jingfan Fan ◽  
Jian Yang ◽  
Yachen Wang ◽  
Siyuan Yang ◽  
Danni Ai ◽  
...  

2018 ◽  
Vol 138 ◽  
pp. 18-24 ◽  
Author(s):  
Fernando Cervantes-Sanchez ◽  
Ivan Cruz-Aceves ◽  
Arturo Hernandez-Aguirre ◽  
Sergio Solorio-Meza ◽  
Teodoro Cordova-Fraga ◽  
...  

2020 ◽  
Vol 2020 ◽  
pp. 1-9
Author(s):  
Zhanchao Xian ◽  
Xiaoqing Wang ◽  
Shaodi Yan ◽  
Dahao Yang ◽  
Junyu Chen ◽  
...  

The automatic segmentation of main vessels on X-ray angiography (XRA) images is of great importance in the smart coronary artery disease diagnosis system. However, existing methods have been developed to this task, but these methods have difficulty in recognizing the coronary artery structure in XRA images. Main vessel segmentation is still a challenging task due to the diversity and small-size region of the vessel in the XRA images. In this study, we propose a robust method for main vessel segmentation by using deep learning architectures with fully convolutional networks. Four deep learning models based on the UNet architecture are evaluated on a clinical dataset, which consists of 3200 X-ray angiography images collected from 1118 patients. Using the precision (Pre), recall (Re), and F1 score (F1) as evaluation metrics, the average Pre, Re, and F1 for main vessel segmentation in the entire experimental dataset is 0.901, 0.898, and 0.900, respectively. 89.8% of the images exhibited a high F1 score >0.8. For the main vessel segmentation in XRA images, our deep learning methods demonstrated that vessels could be segmented in real time with a more optimized implementation, to further facilitate the online diagnosis in smart medical.


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