scholarly journals Complete Genome Sequence of Acute Hepatopancreatic Necrosis Disease-Causing Vibrio campbellii LA16-V1, Isolated from Penaeus vannamei Cultured in a Latin American Country

2017 ◽  
Vol 5 (37) ◽  
Author(s):  
Ye Som Ahn ◽  
Patharapol Piamsomboon ◽  
Kathy F. J. Tang ◽  
Jee Eun Han ◽  
Ji Hyung Kim
Keyword(s):  
Latin American ◽  
Genome Sequence ◽  
Latin American Country ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Penaeus Vannamei ◽  
Content Type ◽  
Geographical Variations ◽  
Acute Hepatopancreatic Necrosis Disease ◽  
Vibrio Campbellii

ABSTRACT We report here the complete genome sequence of Vibrio campbellii, isolated from Penaeus vannamei cultured in a Latin American country. The Tn3-like transposon and pirAB genes were encoded on the plasmid pLA16-2. These data support the geographical variations in the virulence plasmid found among acute hepatopancreatic necrosis disease (AHPND)-causing Vibrio isolates from Latin America and Asia.

scholarly journals Complete Genome Sequence of a Novel Mutant Strain of Vibrio parahaemolyticus from Pacific White Shrimp (Penaeus vannamei)

2018 ◽  
Vol 6 (24) ◽  
Author(s):  
Siddhartha Kanrar ◽  
Arun K. Dhar
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Vibrio Parahaemolyticus ◽  
Pacific White Shrimp ◽  
White Shrimp ◽  
Binary Toxin ◽  
Penaeus Vannamei ◽  
Content Type ◽  
Toxin Genes

ABSTRACT The acute hepatopancreatic necrosis disease (AHPND) of Penaeus vannamei shrimp is caused by Vibrio parahaemolyticus carrying toxin genes, pirA and pirB. We report the complete genome sequence of the novel V. parahaemolyticus strain R14, which did not display AHPND symptoms in P. vannamei despite containing the binary toxin genes.

scholarly journals Complete Genome Sequence of Shewanella sp. Strain TH2012, Isolated from Shrimp in a Cultivation Pond Exhibiting Early Mortality Syndrome

2019 ◽  
Vol 8 (13) ◽  
Author(s):  
Piyanuch Wechprasit ◽  
Muthita Panphloi ◽  
Siripong Thitamadee ◽  
Kallaya Sritunyalucksana ◽  
Anuphap Prachumwat
Keyword(s):  
Virulence Factors ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Early Mortality ◽  
Content Type ◽  
Shrimp Pond ◽  
Early Mortality Syndrome ◽  
Acute Hepatopancreatic Necrosis Disease

Here, we present the complete genome sequence of a Shewanella isolate, TH2012, from a shrimp pond in which shrimp exhibited early mortality syndrome (EMS)/acute hepatopancreatic necrosis disease (AHPND). The complete genome of TH2012 has a prophage-like element and a number of potential virulence factors, making TH2012 a possible contributing factor to EMS outbreaks.

scholarly journals Complete Genome Sequence of Vibrio campbellii DS40M4

2019 ◽  
Vol 8 (4) ◽  
Author(s):  
Sophie M. Colston ◽  
W. Judson Hervey ◽  
W. Connor Horne ◽  
Margo G. Haygood ◽  
Blake D. Petersen ◽  
...  
Keyword(s):  
Genetic Structure ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gene Arrangement ◽  
Draft Assembly ◽  
Content Type ◽  
Oxford Nanopore ◽  
Vibrio Campbellii

We present the complete genome sequence of Vibrio campbellii DS40M4, assembled from Illumina and Oxford Nanopore data. This effort improves upon a previous draft assembly to resolve this organism’s two-chromosome and one-plasmid genetic structure and to provide valuable context for evaluating the gene arrangement and evolution of this species.

scholarly journals Complete Genome Sequence of Malassezia restricta CBS 7877, an Opportunist Pathogen Involved in Dandruff and Seborrheic Dermatitis

2019 ◽  
Vol 8 (6) ◽  
Author(s):  
Stanislas C. Morand ◽  
Morgane Bertignac ◽  
Agnes Iltis ◽  
Iris C. R. M. Kolder ◽  
Walter Pirovano ◽  
...  
Keyword(s):  
Human Skin ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Seborrheic Dermatitis ◽  
Skin Microbiome ◽  
Basidiomycetous Yeasts ◽  
Content Type ◽  
Opportunist Pathogen ◽  
Malassezia Restricta

Malassezia restricta, one of the predominant basidiomycetous yeasts present on human skin, is involved in scalp disorders. Here, we report the complete genome sequence of the lipophilic Malassezia restricta CBS 7877 strain, which will facilitate the study of the mechanisms underlying its commensal and pathogenic roles within the skin microbiome.

scholarly journals Complete Genome Sequence of Cupriavidus necator H16 (DSM 428)

2019 ◽  
Vol 8 (37) ◽  
Author(s):  
Gareth T. Little ◽  
Muhammad Ehsaan ◽  
Christian Arenas-López ◽  
Kamran Jawed ◽  
Klaus Winzer ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Cupriavidus Necator ◽  
Rrna Genes ◽  
Trna Genes ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Cupriavidus Necator H16

The hydrogen-utilizing strain Cupriavidus necator H16 (DSM 428) was sequenced using a combination of PacBio and Illumina sequencing. Annotation of this strain reveals 6,543 protein-coding genes, 263 pseudogenes, 64 tRNA genes, and 15 rRNA genes.

scholarly journals Complete Genome Sequence of Stenotrophomonas Phage Mendera

2020 ◽  
Vol 9 (1) ◽  
Author(s):  
Kameron D. Garza ◽  
Heather Newkirk ◽  
Russell Moreland ◽  
Carlos F. Gonzalez ◽  
Mei Liu ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Stenotrophomonas Maltophilia ◽  
Human Pathogen ◽  
Base Pairs ◽  
Content Type ◽  
Genomic Annotation ◽  
Opportunistic Human Pathogen

Stenotrophomonas maltophilia is an emerging opportunistic human pathogen. In this report, we describe the isolation and genomic annotation of the S. maltophilia-infecting bacteriophage Mendera. A myophage of 159,961 base pairs, Mendera is T4-like and related most closely to Stenotrophomonas phage IME-SM1.

scholarly journals Complete Genome Sequence of Mycobacterium chimaera Strain CDC2015-22-71

2017 ◽  
Vol 5 (31) ◽  
Author(s):  
Nabeeh A. Hasan ◽  
Adrian Lawsin ◽  
K. Allison Perry ◽  
Efe Alyanak ◽  
Nadege C. Toney ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nontuberculous Mycobacterium ◽  
Open Heart ◽  
Mycobacterium Species ◽  
Content Type ◽  
Invasive Infections

ABSTRACT Mycobacterium chimaera is a nontuberculous mycobacterium species commonly found in the environment. Here, we report the first complete genome sequence of a strain from the investigation of invasive infections following open-heart surgeries that used contaminated LivaNova Sorin Stockert 3T heater-cooler devices.

scholarly journals Complete Genome Sequence of Serotype III Streptococcus agalactiae Sequence Type 17 Strain 874391

2017 ◽  
Vol 5 (42) ◽  
Author(s):  
Matthew J. Sullivan ◽  
Brian M. Forde ◽  
Darren W. Prince ◽  
Deepak S. Ipe ◽  
Nouri L. Ben Zakour ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Streptococcus Agalactiae ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Historical Context ◽  
Invasive Disease ◽  
Sequence Type ◽  
Content Type ◽  
Disproportionate Number

ABSTRACT Here we report the complete genome sequence of Streptococcus agalactiae strain 874391. This serotype III isolate is a member of the hypervirulent sequence type 17 (ST-17) lineage that causes a disproportionate number of cases of invasive disease in humans and mammals. A brief historical context of the strain is discussed.

scholarly journals Complete Genome Sequence of Bacillus subtilis Strain WB800N, an Extracellular Protease-Deficient Derivative of Strain 168

2018 ◽  
Vol 7 (18) ◽  
Author(s):  
Haeyoung Jeong ◽  
Da-Eun Jeong ◽  
Seung-Hwan Park ◽  
Seong Joo Kim ◽  
Soo-Keun Choi
Keyword(s):  
Bacillus Subtilis ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Genetically Engineered ◽  
Subtilis Strain ◽  
Secretory Proteins ◽  
Extracellular Proteases ◽  
Content Type ◽  
Protease Deficient

Bacillus subtilis WB800N is a genetically engineered variant of B. subtilis 168, such that all extracellular proteases are disrupted, which enables WB800N to be widely used for the expression of secretory proteins. Here, we report the 4.2-Mb complete genome sequence of WB800N and present all of the disrupted gene structure.

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