scholarly journals Draft Genome Sequence of the Fungus Trametes hirsuta 072

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Andrey R. Pavlov ◽  
Tatiana V. Tyazhelova ◽  
Konstantin V. Moiseenko ◽  
Daria V. Vasina ◽  
Olga V. Mosunova ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Annotation ◽  
Draft Genome ◽  
Open Reading Frames ◽  
White Rot ◽  
Draft Genome Sequence ◽  
Trametes Hirsuta ◽  
Protein Coding ◽  
Putative Protein ◽  
Reading Frames

A standard draft genome sequence of the white rot saprotrophic fungus Trametes hirsuta 072 ( Basidiomycota , Polyporales ) is presented. The genome sequence contains about 33.6 Mb assembled in 141 scaffolds with a G+C content of ~57.6%. The draft genome annotation predicts 14,598 putative protein-coding open reading frames (ORFs).

scholarly journals Draft Genome Sequence of a Novel Marinobacter sp. Strain from Honolulu Harbor, Hawai‘i

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Xuehua Wan ◽  
Shaobin Hou ◽  
Siobhan L. Burns ◽  
Jennifer A. Saito ◽  
Stuart P. Donachie
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Reading Frames

Marinobacter sp. strain X15-166B T was cultivated from sediment in Honolulu Harbor, Hawai‘i. The X15-166B T draft genome of 3,490,661 bp encodes 3,115 protein-coding open reading frames. We anticipate that the genome will provide insights into the strain’s lifestyle and the evolution of Marinobacter .

scholarly journals Draft Genome Sequence of a Novel Luteimonas sp. Strain from Coral Mucus, Hawai‘i

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Xuehua Wan ◽  
James M. Miller ◽  
Sonia J. Rowley ◽  
Shaobin Hou ◽  
Stuart P. Donachie
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Diguanylate Cyclase ◽  
Protein Coding ◽  
Coral Mucus ◽  
Coding Regions ◽  
Porites Lobata ◽  
Reading Frames

Luteimonas sp. strain JM171 was cultivated from mucus collected around the coral Porites lobata . The JM171 draft genome of 2,992,353 bp contains 2,672 protein-coding open reading frames, 45 tRNA coding regions, and encodes a putative globin-coupled diguanylate cyclase, Jm GReg.

scholarly journals Draft Genome Sequence of Saccharomonospora sp. Strain LRS4.154, a Moderately Halophilic Actinobacterium with the Biotechnologically Relevant Polyketide Synthase and Nonribosomal Peptide Synthetase Systems

2017 ◽  
Vol 5 (21) ◽  
Author(s):  
Scarlett Alonso-Carmona ◽  
Blanca Vera-Gargallo ◽  
Rafael R. de la Haba ◽  
Antonio Ventosa ◽  
Horacio Sandoval-Trujillo ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Polyketide Synthase ◽  
Draft Genome ◽  
Nonribosomal Peptide Synthetase ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Nonribosomal Peptide ◽  
Moderately Halophilic ◽  
Peptide Synthetase ◽  
Reading Frames

ABSTRACT The draft genome sequence of Saccharomonospora sp. strain LRS4.154, a moderately halophilic actinobacterium, has been determined. The genome has 4,860,108 bp, a G+C content of 71.0%, and 4,525 open reading frames (ORFs). The clusters of PKS and NRPS genes, responsible for the biosynthesis of a large number of biomolecules, were identified in the genome.

scholarly journals Draft Genome Sequence of a Chitinophaga Strain Isolated from a Lignocellulose Biomass-Degrading Consortium

2017 ◽  
Vol 5 (3) ◽  
Author(s):  
Luciano T. Kishi ◽  
Erica M. Lopes ◽  
Camila C. Fernandes ◽  
Gabriela C. Fernandes ◽  
Lais P. Sacco ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Plant Biomass ◽  
Draft Genome ◽  
Bacterial Consortium ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Draft Genome Assembly ◽  
Reading Frames ◽  
Lignocellulose Biomass

ABSTRACT Chitinophaga comprises microorganisms capable of degrading plant-derived carbohydrates, serving as a source of new tools for the characterization and degradation of plant biomass. Here, we report the draft genome assembly of a Chitinophaga strain with 8.2 Mbp and 7,173 open reading frames (ORFs), isolated from a bacterial consortium that is able to degrade lignocellulose.

scholarly journals Draft Genome Sequence of Bradyrhizobium elkanii TnphoA 33, a Producer of Polyhydroxyalkanoates

2017 ◽  
Vol 5 (8) ◽  
Author(s):  
Erica M. Lopes ◽  
Luciano T. Kishi ◽  
Camila C. Fernandes ◽  
Fernanda Larozza Paganelli ◽  
Lucia M. C. Alves ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Nitrogen Fixing ◽  
Content Type ◽  
Draft Genome Assembly ◽  
Bradyrhizobium Elkanii ◽  
Reading Frames

ABSTRACT The genus Bradyrhizobium comprises bacteria with the ability to form nitrogen-fixing symbioses with legumes. They are of great interest in agriculture, as well as for the production of biopolymers such as polyhydroxyalkanoates. Here, we report the draft genome assembly of Bradyrhizobium elkanii TnphoA 33 comprising 9 Mb, 1,124 contigs, and 9,418 open reading frames.

scholarly journals Draft Genome Sequence of “ Candidatus Liberibacter asiaticus” from Diaphorina citri in Guangdong, China

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
F. Wu ◽  
Z. Zheng ◽  
X. Deng ◽  
Y. Cen ◽  
G. Liang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Diaphorina Citri ◽  
Candidatus Liberibacter Asiaticus ◽  
A Genome ◽  
Candidatus Liberibacter ◽  
Liberibacter Asiaticus ◽  
Reading Frames

The draft genome sequence of “ Candidatus Liberibacter asiaticus” strain YCPsy from an Asian citrus psyllid ( Diaphorina citri ) in Guangdong, China, is reported here. The YCPsy strain has a genome size of 1,233,647 bp, 36.5% G+C content, 1,171 open reading frames (ORFs), and 53 RNAs.

scholarly journals Draft Genome Sequence ofAeromonassp. Strain EERV15

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Elham Ehsani ◽  
Israel Barrantes ◽  
Johanna Vandermaesen ◽  
Robert Geffers ◽  
Michael Jarek ◽  
...  
Keyword(s):  
Amino Acid ◽  
Genome Sequence ◽  
Sequence Similarity ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Amino Acid Sequence Similarity ◽  
Sand Filter ◽  
Aeromonas Veronii ◽  
Reading Frames

We report here the draft genome sequence ofAeromonassp. strain EERV15 isolated from sand filter. The organism most closely related toAeromonassp. EERV15 isAeromonas veroniiB565, with an average 83% amino acid sequence similarity of putatively encoded protein open reading frames.

scholarly journals Draft Genome Sequence of Andreprevotia sp. Strain IGB-42, a Chitinolytic Bacterium Isolated from a Soil Sample of an Anthill in Stuttgart, Germany

2020 ◽  
Vol 9 (10) ◽  
Author(s):  
Yevhen Vainshtein ◽  
Nicole Werner ◽  
Philipp Kirstahler ◽  
Karolina Glanz ◽  
Christian Grumaz ◽  
...  
Keyword(s):  
Soil Sample ◽  
Genome Sequence ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Degrading Bacterium ◽  
Chitinase Genes ◽  
Reading Frames

Andreprevotia sp. strain IGB-42 is a chitin-degrading bacterium isolated from the soil of an anthill. The genome contains 4.7 Mb, a G+C content of 61.31%, 4,257 predicted open reading frames, and a set of industrially interesting chitinase genes.

scholarly journals Draft Genome Sequence of Arthrobacter globiformis mrc11, an Antimicrobial Agent Isolated from a Khangkhui Cave Deposit

2019 ◽  
Vol 8 (11) ◽  
Author(s):  
Dinabandhu Sahoo ◽  
N. Jusna Devi ◽  
N. Ngashangva ◽  
P. Momota ◽  
Y. Rojeena ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Arthrobacter Globiformis ◽  
Content Type ◽  
A Genome ◽  
Reading Frames ◽  
Cave Deposit

Arthrobacter globiformis mrc11 was isolated from a Khangkhui cave deposit. Here, we report the draft genome sequence of this phylogenetically novel organism, which has a genome size of 4.89 Mb, a 65.9% GC content, and 4,657 predicted open reading frames that can be translated.

scholarly journals Draft Genome Sequence of the Heavy-Metal-Tolerant Marine Yeast Debaryomyces hansenii J6

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Camille A. Berrocal ◽  
Ramon E. Rivera-Vicens ◽  
Govind S. Nadathur
Keyword(s):  
Heavy Metal ◽  
Genome Sequence ◽  
Draft Genome ◽  
Debaryomyces Hansenii ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Marine Yeast ◽  
Reading Frames

Debaryomyces hansenii J6 is a heavy-metal-tolerant, flavinogenic yeast isolated from a Swedish estuary. We present here the 11.63-Mb genome of this organism containing 5,717 open reading frames. Comparison with available Debaryomyces genomes demonstrated that J6 is closer to D. hansenii MTCC234 than D. fabry CBS789 and D. hansenii CBS767.

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