scholarly journals Draft Genome Sequence of a Chitinophaga Strain Isolated from a Lignocellulose Biomass-Degrading Consortium

2017 ◽  
Vol 5 (3) ◽  
Author(s):  
Luciano T. Kishi ◽  
Erica M. Lopes ◽  
Camila C. Fernandes ◽  
Gabriela C. Fernandes ◽  
Lais P. Sacco ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Plant Biomass ◽  
Draft Genome ◽  
Bacterial Consortium ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Draft Genome Assembly ◽  
Reading Frames ◽  
Lignocellulose Biomass

ABSTRACT Chitinophaga comprises microorganisms capable of degrading plant-derived carbohydrates, serving as a source of new tools for the characterization and degradation of plant biomass. Here, we report the draft genome assembly of a Chitinophaga strain with 8.2 Mbp and 7,173 open reading frames (ORFs), isolated from a bacterial consortium that is able to degrade lignocellulose.

scholarly journals Draft Genome Sequence of Bradyrhizobium elkanii TnphoA 33, a Producer of Polyhydroxyalkanoates

2017 ◽  
Vol 5 (8) ◽  
Author(s):  
Erica M. Lopes ◽  
Luciano T. Kishi ◽  
Camila C. Fernandes ◽  
Fernanda Larozza Paganelli ◽  
Lucia M. C. Alves ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Nitrogen Fixing ◽  
Content Type ◽  
Draft Genome Assembly ◽  
Bradyrhizobium Elkanii ◽  
Reading Frames

ABSTRACT The genus Bradyrhizobium comprises bacteria with the ability to form nitrogen-fixing symbioses with legumes. They are of great interest in agriculture, as well as for the production of biopolymers such as polyhydroxyalkanoates. Here, we report the draft genome assembly of Bradyrhizobium elkanii TnphoA 33 comprising 9 Mb, 1,124 contigs, and 9,418 open reading frames.

scholarly journals Draft Genome Sequence of Saccharomonospora sp. Strain LRS4.154, a Moderately Halophilic Actinobacterium with the Biotechnologically Relevant Polyketide Synthase and Nonribosomal Peptide Synthetase Systems

2017 ◽  
Vol 5 (21) ◽  
Author(s):  
Scarlett Alonso-Carmona ◽  
Blanca Vera-Gargallo ◽  
Rafael R. de la Haba ◽  
Antonio Ventosa ◽  
Horacio Sandoval-Trujillo ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Polyketide Synthase ◽  
Draft Genome ◽  
Nonribosomal Peptide Synthetase ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Nonribosomal Peptide ◽  
Moderately Halophilic ◽  
Peptide Synthetase ◽  
Reading Frames

ABSTRACT The draft genome sequence of Saccharomonospora sp. strain LRS4.154, a moderately halophilic actinobacterium, has been determined. The genome has 4,860,108 bp, a G+C content of 71.0%, and 4,525 open reading frames (ORFs). The clusters of PKS and NRPS genes, responsible for the biosynthesis of a large number of biomolecules, were identified in the genome.

scholarly journals Draft Genome Sequence of Bacillus marisflavi CK-NBRI-03, Isolated from Agricultural Soil

2020 ◽  
Vol 9 (7) ◽  
Author(s):  
Mayank Gupta ◽  
Puneet Singh Chauhan ◽  
Sudhir K. Sopory ◽  
Sneh L. Singla-Pareek ◽  
Nidhi Adlakha ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Agricultural Soil ◽  
Draft Genome ◽  
Uttar Pradesh ◽  
Draft Genome Sequence ◽  
Positive Bacterium ◽  
Gram Positive ◽  
Content Type ◽  
Draft Genome Assembly

Here, we report the 4.34-Mb draft genome assembly of Bacillus marisflavi CK-NBRI-03 (or P3), a Gram-positive bacterium, with an average G+C content of 48.66%. P3 was isolated from agricultural soil from the Badaun (midwestern plain zone) region of Uttar Pradesh, India.

scholarly journals Draft Genome Sequence ofBacillus subtilisIa1a, a New Strain for Poly-γ-Glutamic Acid and Exopolysaccharide Production

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Mohammad H. A. Ibrahim ◽  
Brady F. Cress ◽  
Robert J. Linhardt ◽  
Mattheos A. G. Koffas ◽  
Richard A. Gross
Keyword(s):  
Bacillus Subtilis ◽  
Glutamic Acid ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Carbon Sources ◽  
Draft Genome Sequence ◽  
High Quality ◽  
Exopolysaccharide Production ◽  
Draft Genome Assembly

We report here the 4.092-Mb high-quality draft genome assembly of a newly isolated poly-γ-glutamic acid–producing strain,Bacillus subtilisIa1a. The genome sequence is considered a critical tool to facilitate the engineering of improved production strains. Exopolysaccharides and many industrially important enzymes can be produced by this new strain utilizing different carbon sources.

scholarly journals Draft Genome Sequence of Branchiibius sp. NY16-3462-2, Isolated from a Mixed Clinical Sample

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Pascal Lapierre ◽  
Tanya A. Halse ◽  
Joseph Shea ◽  
Vincent E. Escuyer ◽  
Kimberlee A. Musser
Keyword(s):  
Mycobacterium Tuberculosis ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Clinical Sample ◽  
Draft Genome ◽  
Gc Content ◽  
Draft Genome Sequence ◽  
Gram Positive ◽  
Draft Genome Assembly ◽  
Gram Positive Cocci

Here, we report the release of a draft genome assembly of a Gram-positive cocci Branchiibius sp. NY16-3462-2 with a high-GC content, sequenced from a mixed clinical sample containing Mycobacterium tuberculosis . This genome is the first publicly available sequence from a representative of the genus Branchiibius .

scholarly journals Draft Genome Sequence of Salegentibacter sp. Strain BDJ18, a Plankton-Associated Bacterium in the Northeast Atlantic Ocean

2021 ◽  
Vol 10 (36) ◽  
Author(s):  
Emily J. McDermith ◽  
Alexa R. Sterling ◽  
Matthew J. Bertin ◽  
Bethany D. Jenkins
Keyword(s):  
Atlantic Ocean ◽  
Genome Sequence ◽  
Marine Environment ◽  
Genome Assembly ◽  
Draft Genome ◽  
Microbial Interactions ◽  
Draft Genome Sequence ◽  
Northeast Atlantic ◽  
Draft Genome Assembly ◽  
Northeast Atlantic Ocean

Salegentibacter sp. strain BDJ18 was isolated from a plankton-associated seawater sample from the northeast Atlantic Ocean. We report its draft genome assembly, which includes genes potentially important for microbial interactions in the marine environment.

scholarly journals Draft Genome Sequence of “ Candidatus Liberibacter asiaticus” from Diaphorina citri in Guangdong, China

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
F. Wu ◽  
Z. Zheng ◽  
X. Deng ◽  
Y. Cen ◽  
G. Liang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Diaphorina Citri ◽  
Candidatus Liberibacter Asiaticus ◽  
A Genome ◽  
Candidatus Liberibacter ◽  
Liberibacter Asiaticus ◽  
Reading Frames

The draft genome sequence of “ Candidatus Liberibacter asiaticus” strain YCPsy from an Asian citrus psyllid ( Diaphorina citri ) in Guangdong, China, is reported here. The YCPsy strain has a genome size of 1,233,647 bp, 36.5% G+C content, 1,171 open reading frames (ORFs), and 53 RNAs.

scholarly journals Draft Genome Sequence of the Fungus Trametes hirsuta 072

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Andrey R. Pavlov ◽  
Tatiana V. Tyazhelova ◽  
Konstantin V. Moiseenko ◽  
Daria V. Vasina ◽  
Olga V. Mosunova ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Annotation ◽  
Draft Genome ◽  
Open Reading Frames ◽  
White Rot ◽  
Draft Genome Sequence ◽  
Trametes Hirsuta ◽  
Protein Coding ◽  
Putative Protein ◽  
Reading Frames

A standard draft genome sequence of the white rot saprotrophic fungus Trametes hirsuta 072 ( Basidiomycota , Polyporales ) is presented. The genome sequence contains about 33.6 Mb assembled in 141 scaffolds with a G+C content of ~57.6%. The draft genome annotation predicts 14,598 putative protein-coding open reading frames (ORFs).

scholarly journals Draft Genome Sequence ofAeromonassp. Strain EERV15

2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Elham Ehsani ◽  
Israel Barrantes ◽  
Johanna Vandermaesen ◽  
Robert Geffers ◽  
Michael Jarek ◽  
...  
Keyword(s):  
Amino Acid ◽  
Genome Sequence ◽  
Sequence Similarity ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Amino Acid Sequence Similarity ◽  
Sand Filter ◽  
Aeromonas Veronii ◽  
Reading Frames

We report here the draft genome sequence ofAeromonassp. strain EERV15 isolated from sand filter. The organism most closely related toAeromonassp. EERV15 isAeromonas veroniiB565, with an average 83% amino acid sequence similarity of putatively encoded protein open reading frames.

scholarly journals Draft Genome Sequence of a Novel Marinobacter sp. Strain from Honolulu Harbor, Hawai‘i

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Xuehua Wan ◽  
Shaobin Hou ◽  
Siobhan L. Burns ◽  
Jennifer A. Saito ◽  
Stuart P. Donachie
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Reading Frames

Marinobacter sp. strain X15-166B T was cultivated from sediment in Honolulu Harbor, Hawai‘i. The X15-166B T draft genome of 3,490,661 bp encodes 3,115 protein-coding open reading frames. We anticipate that the genome will provide insights into the strain’s lifestyle and the evolution of Marinobacter .

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