scholarly journals Genome Sequence of Cold-Adapted Pseudomonas mandelii Strain JR-1

2012 ◽  
Vol 194 (12) ◽  
pp. 3263-3263 ◽  
Author(s):  
S.-H. Jang ◽  
J. Kim ◽  
J. Kim ◽  
S. Hong ◽  
C. Lee
Author(s):  
Quynh DangThu ◽  
Thu-Thuy Nguyen ◽  
Sei-Heon Jang ◽  
ChangWoo Lee

Abstract Sugar alcohols (polyols) have important roles as nutrients, anti-freezing agents, and scavengers of free radicals in cold-adapted bacteria, but the characteristics of polyol dehydrogenases in cold-adapted bacteria remain largely unknown. In this study, based on the observation that a cold-adapted bacterium Pseudomonas mandelii JR-1 predominantly utilized D-sorbitol as its carbon source, among the four polyols examined (D-galactitol, D-mannitol, D-sorbitol, or D-xylitol), we cloned and characterized a sorbitol dehydrogenase (SDH, EC 1.1.1.14) belonging to the short-chain dehydrogenase/reductase family from this bacterium (the SDH hereafter referred to as PmSDH). PmSDH contained Asn111, Ser140, Tyr153, and Lys157 as catalytic active site residues and existed as a ∼67 kDa dimer in size-exclusion chromatography. PmSDH converted D-sorbitol to D-fructose using NAD+ as a coenzyme and, vice versa, D-fructose to D-sorbitol using NADH as a coenzyme. PmSDH maintained its conformational flexibility, secondary and tertiary structures, and thermal stability at 4–25°C. At 40°C, PmSDH was rapidly denatured. These results indicate that PmSDH, which has a flexible structure and a high catalytic activity at colder temperatures, is well-suited to sorbitol utilization in the cold-adapted bacterium P. mandelii JR-1.


3 Biotech ◽  
2019 ◽  
Vol 9 (7) ◽  
Author(s):  
Alok Kumar Srivastava ◽  
Pragya Saxena ◽  
Anjney Sharma ◽  
Ruchi Srivastava ◽  
Hena Jamali ◽  
...  

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Jacqueline Goordial ◽  
Isabelle Raymond-Bouchard ◽  
Robert Riley ◽  
Jennifer Ronholm ◽  
Nicole Shapiro ◽  
...  

Here, we report the draft genome sequence of Rhodotorula sp. strain JG1b, a yeast that was isolated from ice-cemented permafrost in the upper-elevation McMurdo Dry Valleys, Antarctica. The sequenced genome size is 19.39 Mb, consisting of 156 scaffolds and containing a total of 5,625 predicted genes. This is the first known cold-adapted Rhodotorula sp. sequenced to date.


Author(s):  
Bart Verwaaijen ◽  
Özgülen Cevahir ◽  
Fabian Hitz ◽  
Jacqueline Römmich ◽  
Donat Wulf

Here, we report the complete genome sequence of Pseudomonas sp. strain MM213 of the Pseudomonas mandelii group, which was isolated from a brookside in Bielefeld, Germany. The genome size is 6,746,355 bp, with a GC content of 59.4% and 6,145 predicted protein-coding sequences.


2019 ◽  
Vol 8 (48) ◽  
Author(s):  
Yanina Delegan ◽  
Leonid Valentovich ◽  
Kirill Petrikov ◽  
Anna Vetrova ◽  
Artur Akhremchuk ◽  
...  

Rhodococcus erythropolis X5 is a psychrotrophic (cold-adapted) hydrocarbon-degrading bacterium, as it showed effective n-alkane destruction at low positive temperatures. Here, the genome of strain X5 was completely sequenced; it consists of a 6,472,161-bp circular chromosome (62.25% GC content) and a 526,979-bp linear plasmid, pRhX5-526k (62.37% GC content).


2019 ◽  
Vol 8 (19) ◽  
Author(s):  
Pervaiz Ali ◽  
Aamer Ali Shah ◽  
Fariha Hasan ◽  
Haiyuan Cai ◽  
Ana Sosa ◽  
...  

Pseudomonas sp. strain BGI-2 is a psychrotrophic bacterium isolated from the ice of Batura Glacier in the Karakoram mountain range.


2020 ◽  
Vol 163 ◽  
pp. 2068-2083
Author(s):  
Lijun Wang ◽  
Yuanzhen Mou ◽  
Bo Guan ◽  
Youzhen Hu ◽  
Yan Zhang ◽  
...  
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