scholarly journals Erratum for Shen et al., “Identification of a Novel Enhancer/Chromatin Opening Element Associated with High-Level γ-Globin Gene Expression”

2019 ◽  
Vol 39 (11) ◽  
Author(s):  
Yong Shen ◽  
MacLean A. Bassett ◽  
Aishwarya Gurumurthy ◽  
Rukiye Nar ◽  
Isaac J. Knudson ◽  
...  
2018 ◽  
Vol 32 (S1) ◽  
Author(s):  
Maclean Bassett ◽  
Yong Shen ◽  
Mir Hossain ◽  
Cameron Guy ◽  
Rukiye Nar ◽  
...  

Blood ◽  
2006 ◽  
Vol 108 (11) ◽  
pp. 365-365 ◽  
Author(s):  
Valerie M. Jansen ◽  
Shaji Ramachandran ◽  
Aurelie Desgardin ◽  
Jin He ◽  
Vishwas Parekh ◽  
...  

Abstract Binding of EKLF to the proximal promoter CACC motif is essential for high-level tissue-specific β-globin gene expression. More recent studies have demonstrated that EKLF regulates expression of other erythroid-specific genes, suggesting a broad role for EKLF in co-ordinating gene transcription in differentiating erythroblasts. Given these observations, we hypothesized that EKLF may play a role in synchronizing α- and β-globin gene expression. Supporting this model, studies of fetal erythroblasts derived from EKLF-null embryos revealed a 3-fold reduction in murine α-globin gene expression in fetal erythroblasts when compared to wild type littermate controls. A similar reduction in primary α-globin RNA transcripts was observed in these studies. To further examine the molecular consequences of EKLF function at the α- and β-globin genes in vivo, we utilized an erythroid cell line derived from EKLF null fetal liver cells. We have demonstrated previously that introduction into these cells of the wildtype EKLF cDNA, fused in frame with a mutant estrogen response element results in tamoxifen-dependent rescue of β-globin gene expression. Consistent with our observations in primary erythroblasts, α-globin gene expression is present in the absence of functional EKLF. However, with tamoxifen induction, we observed a 3–5 fold increase in α-globin gene transcription. Interestingly, the kinetics of the changes in transcription of the α- and β-gene transcripts were similar. Enhancement in α-gene transcription was associated with EKLF binding at the α- and β-globin promoters as determined by a quantitative chromatin immunoprecipitation (ChIP) assay. Interestingly, maximal EKLF binding and α-gene transcription was observed within 2 hours of tamoxifen induction. We hypothesized that the role of EKLF may differ function at the promoters, given that a basal level of α-globin gene expression occurs in absence of EKLF binding. Supporting this hypothesis, we observed sequential recruitment of p45NF-E2, RNA polymerase II (Pol II) and the co-activator CBP to the β-promoter with tamoxifen induction. No change in GATA-1 binding was observed. In contrast, p45NF-E2 does not bind to the α-promoter and the kinetics of GATA-1 and PolII association is unchanged after tamoxifen induction. Taken together, our results demonstrate that EKLF regulates the co-ordinate high-level transcription of the α- and β-globin genes, binding in a kinetically identical manner to the gene promoters. However, the effects of EKLF on transacting factor recruitment (and chromatin modification) differ between the promoters, consistent with the idea that EKLF acts in a context-specific manner to modulate gene transcription.


Blood ◽  
1993 ◽  
Vol 82 (5) ◽  
pp. 1666-1671
Author(s):  
JA Sharpe ◽  
RJ Summerhill ◽  
P Vyas ◽  
G Gourdon ◽  
DR Higgs ◽  
...  

Erythroid-specific DNase 1 hypersensitive sites have been identified at the promoters of the human alpha-like genes and within the region from 4 to 40 kb upstream of the gene cluster. One of these sites, HS-40, has been shown previously to be the major regulator of tissue-specific alpha-globin gene expression. We have now examined the function of other hypersensitive sites by studying the expression in mouse erythroleukemia (MEL) cells of various fragments containing these sites attached to HS-40 and an alpha-globin gene. High level expression of the alpha gene was observed in all cases. When clones of MEL cells bearing a single copy of the alpha-globin gene fragments were examined, expression levels were similar to those of the endogenous mouse alpha genes and similar to MEL cells bearing beta gene constructs under the control of the beta-globin locus control region. However, there was no evidence that the additional hypersensitive sites increased the level of expression or conferred copy number dependence on the expression of a linked alpha gene in MEL cells.


1988 ◽  
Vol 8 (11) ◽  
pp. 4917-4926 ◽  
Author(s):  
T Enver ◽  
J W Zhang ◽  
N P Anagnou ◽  
G Stamatoyannopoulos ◽  
T Papayannopoulou

We investigated the programs of globin gene expression in three known (K562, HEL, and KMOE) and three novel (OCI-M1, OCI-M2, and HEL-R) human erythroleukemic cell lines of adult origin. RNAs from induced and uninduced cells were analyzed for epsilon-, gamma-, delta-, and beta-, zeta-globin-specific transcripts. While high-level gamma-globin expression was common, the lines differed in their expression of embryonic (epsilon, zeta) and adult (delta, beta) globin mRNAs. The patterns of globin gene methylation were generally consistent with their observed expression profiles, with many of the same correlations being seen in normal cells. Although the programs of globin gene expression and methylation displayed by the lines appeared to be diverse, they were not random; rather, they made developmental sense, mimicking defined globin gene programs observed during normal human development. The characteristics exhibited by several of these lines suggest that they may have been derived from the transformation of multi- or oligopotent hematopoietic progenitor cells. We speculate that the expression of fetal or embryonic globins in these adult erythroleukemic cell lines is not an aberration of neoplastic transformation but is indicative of a fetal or embryonic potential in normal adult hematopoietic progenitors.


2009 ◽  
Vol 284 (30) ◽  
pp. 20130-20135 ◽  
Author(s):  
I-Ju Lin ◽  
Zhuo Zhou ◽  
Valerie J. Crusselle-Davis ◽  
Babak Moghimi ◽  
Kunjal Gandhi ◽  
...  

Blood ◽  
2005 ◽  
Vol 106 (11) ◽  
pp. 3649-3649
Author(s):  
Rodwell H. Mabaera ◽  
Christopher H. Lowrey

Abstract Pharmacologic reactivation of γ-globin globin gene expression offers a potential strategy for ameliorating the consequences of β-thalassemia and sickle cell disease. While previous clinical and laboratory studies have established the effectiveness of inhibitors of DNA methylation in stimulating the expression of the fetal globin genes, the molecular mechanisms by which this effect is achieved are not well understood. In order to study the mechanisms and pharmacologic properties of these agents in a clinically relevant laboratory model, we have compared five different in vitro human erythroid differentiation protocols. In performing these experiments we sought a system which would yield a large number of erythroid cells exhibiting a pattern of globin gene expression which closely matched the pattern seen in adult bone marrow. FACS purified CD34+ peripheral blood stem cells (PBSC) from healthy donors were obtained from the NHLBI Programs of Excellence in Gene Therapy Hematopoietic Cell Processing Core (PEGT-HCPC) at the Fred Hutchinson Cancer Research Center. PBSC were cultured in the following different combinations of recombinant human cytokines: A) EPO alone for 12d; B) EPO, SCF and IL-3 for 14d; C) EPO, SCF and IL-3 for 7d followed by EPO alone for 7d; D) EPO, GM-CSF and IL-3 for 12d; and E) SCF, IL-3 and Flt-3 ligand for 7d followed by EPO alone for 11d. Cells were counted every day and differentiation assessed by light microscopy and flow cytometry using CD34, glycophorin A (GPA) and transferrin antibodies. Globin gene expression was measured by real time RT-PCR. Cultures B, C and E underwent exponential expansion from d4, while A and D showed no appreciable expansion. By day 6, all cultures that had EPO from d0 (A–D) consisted mainly of CD34−, GPA+ proerythroblasts. Basophilic erythroblasts, followed by polychromatophilic forms were evident at 8–10 days. By the end of each experiment more than 90% of cells in these cultures were erythroid. In contrast, condition E showed persistent expression of CD34 until removal of IL-3, SCF and flt-3 ligand. Proerythroblasts appeared on day 10 followed by basophilic and polychromatophilic forms at 13–15 days. At the end of the culture period 63% erythroid cells (by flow) were seen in a background of maturing monocytes and granulocytes. RT-PCR showed that induction of globin mRNA occured in all cultures at or just before appearance of basophilic erythroblasts (day 7–9 for cultures A–D and day 11–13 for E). While conditions C and E showed the highest levels of globin gene expression, peak expression under condition C for γ- and β-globins were equivalent and their expression overlapped. Condition E showed a much higher level of β- than γ-globin expression (β/γ ratio of 8:1), the rise in β-globin mRNA (d9–14) was accompanied by a fall γ-globin mRNA and β-globin expression persisted at a high level until the end of the experiment (d14–18). Of the 5 differentiation protocols tested, condition E appears to be the best choice for future studies of pharmacological reactivation of γ-globin gene expression as it produced a large number of erythroid cells which exhibited a gene expression pattern similar to that seen in normal human bone marrow and had a period of stable high-level β-globin gene expression which persisted over several days.


2018 ◽  
Vol 38 (19) ◽  
Author(s):  
Yong Shen ◽  
MacLean A. Bassett ◽  
Aishwarya Gurumurthy ◽  
Rukiye Nar ◽  
Isaac J. Knudson ◽  
...  

ABSTRACT The organization of the five β-type globin genes on chromosome 11 reflects the timing of expression during erythroid cell development, with the embryonic ε-globin gene being located at the 5′ end, followed by the two fetal γ-globin genes, and with the adult β- and δ-globin genes being located at the 3′ end. Here, we functionally characterized a DNase I-hypersensitive site (HS) located 4 kb upstream of the Gγ-globin gene (HBG-4kb HS). This site is occupied by transcription factors USF1, USF2, EGR1, MafK, and NF-E2 in the human erythroleukemia cell line K562 and exhibits histone modifications typical for enhancers. We generated a synthetic zinc finger (ZF) DNA-binding domain targeting the HBG-4kb HS (HBG-4kb ZF). The HBG-4kb ZF interacted with the target site in vitro and in the context of cells with a high affinity and specificity. Direct delivery of the HBG-4kb ZF to K562 and primary human erythroid cells caused a reduction in γ-globin gene expression which was associated with decreased binding of transcription factors and active histone marks at and downstream of the HS. The data demonstrate that the HBG-4kb HS is important for fetal globin production and suggest that it may act by opening chromatin in a directional manner.


Blood ◽  
2006 ◽  
Vol 108 (11) ◽  
pp. 5485-5485
Author(s):  
Eleni Papanikolaou ◽  
Maria Georgomanoli ◽  
Nicholas P. Anagnou

Abstract Lentiviral vectors for γ-globin genes are being developed as an efficient tool for the gene therapy of β-chain hemoglobinopathies. The γ-globin gene has been chosen as a therapeutic gene based on the potent anti-sickling properties of γ-globins and on their ability to bind free α-chains. However, their development has been hampered by low titers, variable expression and gene silencing. To address these problems, we have initiated a strategy to exploit novel regulatory elements of the β-cluster conferring high level and sustained globin gene expression. To this end, we have successfully used the HPFH-2 enhancer combined with a 210 bp Aγ-globin gene promoter harboring the Greek HPFH -117 mutation and the HS-40 enhancer from the α-globin locus, in a series of oncoretrovirus vectors (Fragkos et al. Gene Ther12:1591–1600, 2005). Based on the high level of expression of the Aγ-gene (248 ± 99 % per copy of mouse α-globin) and the absence of vector silencing of these vectors and to further exploit the superior transducing efficiency of hematopoietic stem cells by lentiviral vectors, in the present study we have generated two novel self-inactivating lentiviral vectors containing the above regulatory elements. Specifically, vector GGHI contains an expression cassette for Aγ-globin gene linked to the 210 bp Aγ-gene promoter with the Greek HPFH -117 point mutation, the HS-40 enhancer at its 5′ end and the HPFH-2 enhancer at its 3′ end, as well as the cHS4 insulator in the 3′ LTR. The second vector, designated GGHI/PM is essentially similar to GGHI but carries also the MGMT-140K cDNA selectable marker under the control of PGK promoter, to enrich for genetically modified cells. Both vectors exhibited high titers of 108 TU/ml, for GGHI and 107 TU/ml, for GGH/PM. Their efficiency was tested in MEL-585 cells transduced at an MOI of 1–100 and a series of independent clones were generated. The clones were further induced to differentiate using hemin and HMBA and the level of expression of the Aγ-globin transgene was determined by Real Time PCR and by flow cytometry. Vector GGHI was expressed at 237 ± 369 % per copy of mouse α-globin with a mean copy number of 19.3 in 8 individual clones, while GGHI/PM was expressed only at 10 ± 16 % per copy of mouse α-globin, with a mean copy number of 60 in 10 individual clones of unselected cells. FACS analysis using an anti-γ-globin antibody, revealed a pancellular expression of γ-globin (mean MFI 69.7 for GGHI and mean MFI 40.15 for GGHI/PM), while there was no expression of the transgene in undifferentiated MEL-585 cells, suggesting that both vectors are erythroid-specific. Moreover, there was no sign of transgene silencing in any of the above clones. The results for the novel GGHI vector, are consistent with our previous studies and reflect a) the robust synergistic capacity of the HS-40 and HPFH-2 elements to enhance transcription, b) the ability of HPFH-2 to reduce the rate of gene silencing and c) the ability of the -117 point mutation to support the Aγ-globin gene expression in the adult erythroid environment, for the first time, in the context of lentiviral vectors. This extremely high level of expression if achieved in vivo, would clearly exceed the proposed therapeutic threshold for the β-chain hemoglobinopathies. Current studies combine their assessment on CD34+ cells from patients with β-thalassemia as well as their evaluation in vivo using the Hbthal3+/− thalassemic mouse model.


Blood ◽  
2008 ◽  
Vol 112 (11) ◽  
pp. sci-19-sci-19
Author(s):  
Yogenthiran Saunthararajah ◽  
Donald Lavelle

Understanding how the human γ-globin gene is regulated has important clinical implications because increased levels of fetal hemoglobin (HbF) are beneficial to patients with sickle cell disease and β-thalassemia. DNA methylation is strongly implicated in developmental silencing of the γ-globin gene based on: an inverse correlation between DNA methylation of the γ-globin gene and its expression, the acquisition of CpG residues within the γ-globin 5’ region during evolution as the γ-globin gene was recruited to fetal stage expression, and the ability of pharmacological inhibitors of DNA methyltransferase (5-azacytidine; decitabine) to reactivate high-level expression of the γ-globin gene in experimental primates that led to clinical trials demonstrating that decitabine increased HbF to therapeutic levels in patients with sickle cell disease. Decitabine treatment in vivo decreases DNA methylation of the γ-globin gene and increases association of RNA polymerase II, acetyl Histone H3 and H4, and Histone H3 (lys4) trimethyl with the γ-globin gene, strongly suggesting that decitabine increases γ-globin gene transcription. These results are consistent with the hypothesis that γ-globin expression in adults is repressed by the binding of methyl DNA binding proteins to the methylated γ-globin promoter with subsequent recruitment of co-repressor complexes that actively repress γ-globin transcription. The reduction of γ-globin gene DNA methylation induced pharmacologically in adults by decitabine is linked to high level γ-globin expression, as is the complete loss of γ-globin gene methylation attained physiologically during erythroid differentiation of fetal liver hematopoietic progenitor cells. The mechanism of action of the drug has not been definitively established, however, and the role of DNA methylation in regulation of γ-globin gene expression remains an active area of investigation. High level γ-globin expression in baboon erythroid progenitor cell cultures without a reduction of γ-globin gene DNA methylation suggests the existence of alternative mechanisms of activation. In addition to reducing DNA methylation, decitabine activates the p38 MAP kinase pathway, increases p21WAF, and accelerates terminal erythroid differentiation. The role of these effects remains to be investigated. Increased understanding of the role of DNA methylation in γ-globin gene regulation is likely to impact the design of future therapies to increase HbF levels.


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