scholarly journals Genome Sequence of a Spodoptera frugiperda Multiple Nucleopolyhedrovirus Isolated from Fall Armyworm (Spodoptera frugiperda) in Nigeria, West Africa

2021 ◽  
Vol 10 (34) ◽  
Author(s):  
Jörg T. Wennmann ◽  
Ghislain T. Tepa-Yotto ◽  
Johannes A. Jehle ◽  
Georg Goergen
Keyword(s):  
West Africa ◽  
Genome Sequence ◽  
Spodoptera Frugiperda ◽  
Gc Content ◽  
Fall Armyworm ◽  
Open Reading Frames ◽  
Entire Genome ◽  
Content Type ◽  
Entire Genome Sequence ◽  
Multiple Nucleopolyhedrovirus

We report the entire genome sequence of an isolate of Spodoptera frugiperda multiple nucleopolyhedrovirus from Nigeria, West Africa. The genome is 132,710 bp long and contains 144 open reading frames. The GC content is 40.3% and, based on baculovirus species demarcation criteria, the isolate belongs to the species Spodoptera frugiperda multiple nucleopolyhedrovirus .

scholarly journals Complete Genome Sequence of Streptococcus pneumoniae Strain Rx1, a Hex Mismatch Repair-Deficient Standard Transformation Recipient

2021 ◽  
Vol 10 (41) ◽  
Author(s):  
Anna Maria Cuppone ◽  
Lorenzo Colombini ◽  
Valeria Fox ◽  
David Pinzauti ◽  
Francesco Santoro ◽  
...  
Keyword(s):  
Streptococcus Pneumoniae ◽  
Mismatch Repair ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gc Content ◽  
Open Reading Frames ◽  
Circular Chromosome ◽  
Content Type ◽  
Sequencing Technologies

The complete genome sequence of Streptococcus pneumoniae strain Rx1, a Hex mismatch repair-deficient standard transformation recipient, was obtained by combining Nanopore and Illumina sequencing technologies. The genome consists of a 2.03-Mb circular chromosome, with 2,054 open reading frames and a GC content of 39.72%.

scholarly journals Characterization and Genome Sequence of Mycobacterium Phage XianYue

2020 ◽  
Vol 9 (25) ◽  
Author(s):  
Wesley D. Rhinehart ◽  
Amanda J. Laidlaw ◽  
Alexis M. O’Neal ◽  
Jessica A. Toller ◽  
Miriam Segura-Totten ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Gc Content ◽  
Open Reading Frames ◽  
Nucleotide Identity ◽  
Content Type ◽  
Reading Frames

ABSTRACT Novel mycobacteriophage XianYue was isolated in Northeast Georgia and infects Mycobacteria smegmatis mc2155. Actinobacteriophages which share at least 50% nucleotide identity are grouped into clusters, with XianYue in cluster A2. Its genome is 52,907 bp with 91 open reading frames (ORFs) and 62.9% GC content, and it shares 86.51% nucleotide identity with mycobacteriophage Trixie.

scholarly journals Biology and Genome Sequence of Streptococcus mutans Phage M102AD

2012 ◽  
Vol 78 (7) ◽  
pp. 2264-2271 ◽  
Author(s):  
Allan L. Delisle ◽  
Ming Guo ◽  
Natalia I. Chalmers ◽  
Gerard J. Barcak ◽  
Geneviève M. Rousseau ◽  
...  
Keyword(s):  
Streptococcus Mutans ◽  
Genome Sequence ◽  
Gc Content ◽  
Genomic Analysis ◽  
Streptococcus Thermophilus ◽  
Open Reading Frames ◽  
Comparative Genomic ◽  
Content Type ◽  
Close Relationship ◽  
Virion Structure

ABSTRACTM102AD is the new designation for aStreptococcus mutansphage described in 1993 as phage M102. This change was necessitated by the genome analysis of anotherS. mutansphage named M102, which revealed differences from the genome sequence reported here. Additional host range analyses confirmed thatS. mutansphage M102AD infects only a few serotype c strains. Phage M102AD adsorbed very slowly to its host, and it cannot adsorb to serotype e and f strains ofS. mutans. M102AD adsorption was blocked by c-specific antiserum. Phage M102AD also adsorbed equally well to heat-treated and trypsin-treated cells, suggesting carbohydrate receptors. Saliva and polysaccharide production did not inhibit plaque formation. The genome of this siphophage consisted of a linear, double-stranded, 30,664-bp DNA molecule, with a GC content of 39.6%. Analysis of the genome extremities indicated the presence of a 3′-overhangcossite that was 11 nucleotides long. Bioinformatic analyses identified 40 open reading frames, all in the same orientation. No lysogeny-related genes were found, indicating that phage M102AD is strictly virulent. No obvious virulence factor gene candidates were found. Twelve proteins were identified in the virion structure by mass spectrometry. Comparative genomic analysis revealed a close relationship betweenS. mutansphages M102AD and M102 as well as withStreptococcus thermophilusphages. This study also highlights the importance of conducting research with biological materials obtained from recognized microbial collections.

scholarly journals Genome Sequence of Borrelia garinii Strain NMJW1, Isolated from China

2012 ◽  
Vol 194 (23) ◽  
pp. 6660-6661 ◽  
Author(s):  
Baogui Jiang ◽  
Hongwu Yao ◽  
Yigang Tong ◽  
Xiaofeng Yang ◽  
Yong Huang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Northeastern China ◽  
Open Reading Frames ◽  
Ixodes Persulcatus ◽  
Borrelia Garinii ◽  
Linear Chromosome ◽  
Content Type ◽  
Reading Frames

ABSTRACTWe announce the draft genome sequence ofBorrelia gariniistrain NMJW1, isolated fromIxodes persulcatusin northeastern China. The 902,789-bp linear chromosome (28.4% GC content) contains 813 open reading frames, 33 tRNAs, and 4 complete rRNAs.

scholarly journals Draft Genome Sequence of Arthrobacter globiformis mrc11, an Antimicrobial Agent Isolated from a Khangkhui Cave Deposit

2019 ◽  
Vol 8 (11) ◽  
Author(s):  
Dinabandhu Sahoo ◽  
N. Jusna Devi ◽  
N. Ngashangva ◽  
P. Momota ◽  
Y. Rojeena ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Arthrobacter Globiformis ◽  
Content Type ◽  
A Genome ◽  
Reading Frames ◽  
Cave Deposit

Arthrobacter globiformis mrc11 was isolated from a Khangkhui cave deposit. Here, we report the draft genome sequence of this phylogenetically novel organism, which has a genome size of 4.89 Mb, a 65.9% GC content, and 4,657 predicted open reading frames that can be translated.

scholarly journals Complete Genome Sequence of Lactobacillus crispatus Type Strain ATCC 33820

2021 ◽  
Vol 10 (32) ◽  
Author(s):  
Lucia Teodori ◽  
Lorenzo Colombini ◽  
Anna Maria Cuppone ◽  
Elisa Lazzeri ◽  
David Pinzauti ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Gc Content ◽  
Open Reading Frames ◽  
Strain Atcc ◽  
Circular Chromosome ◽  
Content Type ◽  
Lactobacillus Crispatus

The complete genome sequence of Lactobacillus crispatus type strain ATCC 33820 was obtained by combining Nanopore and Illumina sequencing technologies. The genome consists of a 2.2-Mb circular chromosome with 2,194 open reading frames and an average GC content of 37.0%.

scholarly journals Genome Sequence of Bovine Herpesvirus 4, a Bovine Rhadinovirus, and Identification of an Origin of DNA Replication

2001 ◽  
Vol 75 (3) ◽  
pp. 1186-1194 ◽  
Author(s):  
Wolfgang Zimmermann ◽  
Hermann Broll ◽  
Bernhard Ehlers ◽  
Hans-Jörg Buhk ◽  
André Rosenthal ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Human Herpesvirus ◽  
Bovine Herpesvirus ◽  
Open Reading Frames ◽  
Gene Arrangement ◽  
Coding Region ◽  
Entire Genome ◽  
Entire Genome Sequence ◽  
Bovine Herpesvirus 4 ◽  
Herpesvirus 4

ABSTRACT Bovine herpesvirus 4 (BoHV-4) is a gammaherpesvirus of cattle. The complete long unique coding region (LUR) of BoHV-4 strain 66-p-347 was determined by a shotgun approach. Together with the previously published noncoding terminal repeats, the entire genome sequence of BoHV-4 is now available. The LUR consists of 108,873 bp with an overall G+C content of 41.4%. At least 79 open reading frames (ORFs) are present in this coding region, 17 of them unique to BoHV-4. In contrast to herpesvirus saimiri and human herpesvirus 8, BoHV-4 has a reduced set of ORFs homologous to cellular genes. Gene arrangement as well as phylogenetic analysis confirmed that BoHV-4 is a member of the genusRhadinovirus. In addition, an origin of replication (ori) in the genome of BoHV-4 was identified byDpnI assays. A minimum of 1.69 kbp located between ORFs 69 and 71 was sufficient to act as a cis signal for replication.

scholarly journals Genome Sequence of Pseudomonas sp. Strain LAP_36, A Rhizosphere Bacterium Isolated from King George Island, Antarctica

2021 ◽  
Vol 10 (48) ◽  
Author(s):  
Sarah Mederos da Silveira ◽  
Sheila da Silva ◽  
Andrew Macrae ◽  
Rommel T. J. Ramos ◽  
Fabrício A. Araújo ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Gc Content ◽  
South Shetland Islands ◽  
Deschampsia Antarctica ◽  
King George Island ◽  
Protein Coding ◽  
Content Type ◽  
Shetland Islands ◽  
Rhizosphere Bacterium

Pseudomonas sp. strain LAP_36 was isolated from rhizosphere soil from Deschampsia antarctica on King George Island, South Shetland Islands, Antarctica. Here, we report on its draft genome sequence, which consists of 8,794,771 bp with 60.0% GC content and 8,011 protein-coding genes.

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