scholarly journals Complete Genome Sequence of Maize Mosaic Nucleorhabdovirus

2019 ◽  
Vol 8 (29) ◽  
Author(s):  
Kathleen M. Martin ◽  
Anna E. Whitfield
Keyword(s):  
Zea Mays ◽  
Next Generation Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Content Type ◽  
Peregrinus Maidis ◽  
Maize Mosaic Virus ◽  
Rapid Amplification ◽  
Generation Sequencing

The complete genome sequence of maize mosaic virus (MMV) was obtained using next-generation sequencing from infected Peregrinus maidis and rapid amplification of cDNA ends from infected Zea mays. The genome of MMV is 12,170 bases, and this project completed the 5′ and 3′ ends and amended the polymerase sequence.

scholarly journals Novel Circo-Like Virus Detected in a Croatian Bat Population

2019 ◽  
Vol 8 (16) ◽  
Author(s):  
Ivana Šimić ◽  
Tomaž Mark Zorec ◽  
Nina Krešić ◽  
Mario Poljak ◽  
Tomislav Bedeković ◽  
...  
Keyword(s):  
Next Generation Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Viral Metagenomics ◽  
Next Generation ◽  
Content Type ◽  
Bat Rabies ◽  
Generation Sequencing ◽  
Metagenomics Analysis

Viral metagenomics analysis of samples from bats has been carried out as part of bat rabies surveillance in Croatia. Here, we report the complete genome sequence of a novel circo-like virus isolated from a sample of Miniopterus schreibersii bat guano determined by Illumina next-generation sequencing.

scholarly journals Genome Sequence of a Divergent Avian Metapneumovirus from a Monk Parakeet (Myiopsitta monachus)

2019 ◽  
Vol 8 (16) ◽  
Author(s):  
Hanna Retallack ◽  
Susan Clubb ◽  
Joseph L. DeRisi
Keyword(s):  
Next Generation Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Disease Outbreak ◽  
Avian Metapneumovirus ◽  
Content Type ◽  
Monk Parakeet ◽  
Myiopsitta Monachus ◽  
Generation Sequencing

Here, we report the coding-complete genome sequence of an avian metapneumovirus from a monk parakeet (Myiopsitta monachus), identified by metagenomic next-generation sequencing during an investigation into a disease outbreak in a captive parrot breeding facility. Based on divergence from known strains, this sequence represents a new subgroup of avian metapneumovirus.

scholarly journals Complete Genome Sequence of Matlo Bat Lyssavirus

2021 ◽  
Vol 10 (20) ◽  
Author(s):  
Colyn S. Grobler ◽  
Jessica Coertse ◽  
Wanda Markotter
Keyword(s):  
South Africa ◽  
Next Generation Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Novel Species ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Sequencing Technologies ◽  
Generation Sequencing

ABSTRACT The genus Lyssavirus includes rabies virus as well as multiple diverse and recently described novel species. Using next-generation sequencing technologies, we have obtained the whole-genome sequence of Matlo bat lyssavirus, which was isolated from a Natal long-fingered bat (Miniopterus natalensis) in South Africa.

scholarly journals First Complete Genome Sequence of a Simian Foamy Virus Infecting the Neotropical Primate Brachyteles arachnoides

2018 ◽  
Vol 7 (2) ◽  
Author(s):  
Cláudia P. Muniz ◽  
Liliane T. F. Cavalcante ◽  
Dawn M. Dudley ◽  
Alcides Pissinatti ◽  
David H. O’Connor ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Genomic Organization ◽  
Foamy Virus ◽  
Simian Foamy Virus ◽  
Content Type ◽  
Neotropical Primate ◽  
Brachyteles Arachnoides ◽  
Generation Sequencing

The complete genome sequence of a simian foamy virus infecting the neotropical primate Brachyteles arachnoides (SFVbar) was obtained using next-generation sequencing and genome walking. The full-length SFVbar genome is composed of 11,994 bp and shows a genomic organization similar to that of other neotropical SFVs.

scholarly journals Complete Genome Sequence of a Novel Human Gammapapillomavirus Isolated from Skin

2017 ◽  
Vol 5 (34) ◽  
Author(s):  
Rosario N. Brancaccio ◽  
Alexis Robitaille ◽  
Sankhadeep Dutta ◽  
Dana E. Rollison ◽  
Nicole Fischer ◽  
...  
Keyword(s):  
Human Papillomavirus ◽  
Next Generation Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Open Reading Frame ◽  
Next Generation ◽  
Degenerate Pcr ◽  
Reading Frame ◽  
Generation Sequencing

ABSTRACT A novel human papillomavirus (HPV ICB1) was fully characterized from a skin swab by using a sensitive degenerate PCR protocol combined with next-generation sequencing. The L1 open reading frame of HPV ICB1 shares 70.54% nucleotide homology with its closest relative, HPV164, and thus constitutes a novel human gammapapillomavirus.

scholarly journals Complete Genome Sequence of an Emergent Recombinant GII.P16-GII.2 Norovirus Strain Associated with an Epidemic Spread in the Winter of 2016-2017 in Hong Kong, China

2017 ◽  
Vol 5 (20) ◽  
Author(s):  
Martin C. W. Chan ◽  
Kirsty Kwok ◽  
Tin-Nok Hung ◽  
Lok-Yi Chan ◽  
Paul K. S. Chan
Keyword(s):  
Hong Kong ◽  
Next Generation Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nucleotide Identity ◽  
Epidemic Spread ◽  
Next Generation ◽  
Generation Sequencing

ABSTRACT A new recombinant norovirus, GII.P16-GII.2, emerged in the winter of 2016-2017. Here, we report the complete genome of this strain (Hu/GII/HK/2016/GII.P16-GII.2/CUHK-NS-1082), which was collected from a patient hospitalized with gastroenteritis in September 2016 in Hong Kong, China, and sequenced using next-generation sequencing. This genome had a 95.2% nucleotide identity to the closest sequence in GenBank.

scholarly journals Complete Genome Sequence of Peste des Petits Ruminants Virus from Georgia, 2016

2017 ◽  
Vol 5 (41) ◽  
Author(s):  
Paulina Z. Rajko-Nenow ◽  
Tabitha G. Cunliffe ◽  
John T. Flannery ◽  
Honorata M. Ropiak ◽  
Lasha Avaliani ◽  
...  
Keyword(s):  
Next Generation Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sanger Sequencing ◽  
Peste Des Petits Ruminants ◽  
Sequencing Technology ◽  
Next Generation Sequencing Technology ◽  
Lineage Iv ◽  
Generation Sequencing

ABSTRACT We report here the complete genome sequence of a peste des petits ruminants virus (PPRV) from the first outbreak of the disease in Georgia in January 2016. Genome sequencing was performed using Illumina next-generation sequencing technology in conjunction with Sanger sequencing. This PPRV/Georgia/Tbilisi/2016 genome sequence clustered within lineage IV PPRV viruses.

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