scholarly journals Complete Genome Sequence and Methylome Analysis of Sphaerotilus natans subsp. sulfidivorans D-507

2019 ◽  
Vol 8 (46) ◽  
Author(s):  
Alexey Fomenkov ◽  
Margarita Grabovich ◽  
Elena Belousova ◽  
Dmitry Smolyakov ◽  
Galina Dubinina ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Heterotrophic Bacterium ◽  
Northern Caucasus ◽  
Methylation Data ◽  
Content Type ◽  
Sphaerotilus Natans ◽  
Caucasus Region ◽  
Methylome Analysis

Sphaerotilus natans subsp. sulfidivorans D-507 is an environmental isolate from a sulfate spring in the northern Caucasus region of Russia. This heterotrophic bacterium is involved in the oxidation of reduced sulfur derivatives. This report includes the finished genome of this strain. In addition, we provide methylation data and the associated enzymes predicted to be responsible for each modified motif.

scholarly journals Complete Genome Sequence of the Lumpy Skin Disease Virus Recovered from the First Outbreak in the Northern Caucasus Region of Russia in 2015

2019 ◽  
Vol 8 (8) ◽  
Author(s):  
Alexander Sprygin ◽  
Yuriy Babin ◽  
Yana Pestova ◽  
Svetlana Kononova ◽  
Olga Byadovskaya ◽  
...  
Keyword(s):  
Disease Virus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Skin Disease ◽  
Complete Genome ◽  
Northern Caucasus ◽  
Lumpy Skin Disease ◽  
Lumpy Skin Disease Virus ◽  
Monophyletic Origin ◽  
Caucasus Region

We report here the complete genome sequence of a lumpy skin disease virus (LSDV) isolate obtained in the Northern Caucasus region of Russia in 2015. The LSDV/Russia/Dagestan/2015 genome sequence grouped with field LSDV isolates found in Serbia and Greece, suggesting the monophyletic origin of LSDV isolates that recently affected countries in the Northern Hemisphere.

scholarly journals Complete Genome Sequence of the Freshwater Bacterium Beggiatoa leptomitoformis Strain D-401

2018 ◽  
Vol 6 (17) ◽  
Author(s):  
Alexey Fomenkov ◽  
Zhiyi Sun ◽  
Tamas Vincze ◽  
Galina Dubinina ◽  
Maria Orlova ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Content Type ◽  
Methylome Analysis

ABSTRACT Here, we report the complete closed genome sequence and methylome analysis of Beggiatoa leptomitoformis strain D-401 (DSM 14945, UNIQEMU 779), which is quite different from the previously described Beggiatoa leptomitoformis neotype strain D-402 T (DSM 14946, UNIQEM U 779) with regard to morphology and lithotrophic growth in the presence of thiosulfate.

scholarly journals Complete Genome Sequence and Methylome Analysis of Micrococcus luteus SA211, a Halophilic, Lithium-Tolerant Actinobacterium from Argentina

2019 ◽  
Vol 8 (4) ◽  
Author(s):  
F. L. Martínez ◽  
B. P. Anton ◽  
P. DasSarma ◽  
V. Rajal ◽  
V. Irazusta ◽  
...  
Keyword(s):  
High Altitude ◽  
Real Time ◽  
Genome Sequence ◽  
Single Molecule ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Micrococcus Luteus ◽  
Content Type ◽  
Wide Range ◽  
Methylome Analysis

Micrococcus luteus has been found in a wide range of habitats. We report the complete genome sequence and methylome analysis of strain SA211 isolated from a hypersaline, lithium-rich, high-altitude salt flat in Argentina with single-molecule real-time sequencing.

scholarly journals Complete Genome Sequence of Sinorhizobium meliloti S35m, a Salt-Tolerant Isolate from Alfalfa Rhizosphere in Soil Native to the Caucasus Region

2021 ◽  
Vol 10 (11) ◽  
Author(s):  
Victoria S. Muntyan ◽  
Alexey M. Afonin ◽  
Maria E. Vladimirova ◽  
Alla S. Saksaganskaya ◽  
Emma S. Gribchenko ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sinorhizobium Meliloti ◽  
Genomic Islands ◽  
Salt Tolerant ◽  
The Caucasus ◽  
Content Type ◽  
Tolerant Strain ◽  
Caucasus Region

The genome of a symbiotically effective salt-tolerant strain, Sinorhizobium meliloti S35m, isolated from alfalfa rhizosphere in soil native to the Caucasian region, was sequenced. Genomic islands, prophages, and elements of a potential CRISPR/Cas I type (Cas3_0_I) system were identified in the genome.

scholarly journals Complete Genome Sequence and Methylome Analysis of Thermoactinomyces vulgaris 2H

2019 ◽  
Vol 8 (32) ◽  
Author(s):  
Houda Mankai ◽  
Brian P. Anton ◽  
Victoria Wu ◽  
Tamas Vincze ◽  
Richard J. Roberts ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gram Positive ◽  
Content Type ◽  
Methylome Analysis ◽  
Thermoactinomyces Vulgaris

Here, we report the complete genome sequence and full methylome analysis of a newly isolated, aerobic, thermophilic, Gram-positive actinomycete, a strain of Thermoactinomyces vulgaris designated strain 2H.

scholarly journals Complete Genome Sequence of Malassezia restricta CBS 7877, an Opportunist Pathogen Involved in Dandruff and Seborrheic Dermatitis

2019 ◽  
Vol 8 (6) ◽  
Author(s):  
Stanislas C. Morand ◽  
Morgane Bertignac ◽  
Agnes Iltis ◽  
Iris C. R. M. Kolder ◽  
Walter Pirovano ◽  
...  
Keyword(s):  
Human Skin ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Seborrheic Dermatitis ◽  
Skin Microbiome ◽  
Basidiomycetous Yeasts ◽  
Content Type ◽  
Opportunist Pathogen ◽  
Malassezia Restricta

Malassezia restricta, one of the predominant basidiomycetous yeasts present on human skin, is involved in scalp disorders. Here, we report the complete genome sequence of the lipophilic Malassezia restricta CBS 7877 strain, which will facilitate the study of the mechanisms underlying its commensal and pathogenic roles within the skin microbiome.

scholarly journals Complete Genome Sequence of Cupriavidus necator H16 (DSM 428)

2019 ◽  
Vol 8 (37) ◽  
Author(s):  
Gareth T. Little ◽  
Muhammad Ehsaan ◽  
Christian Arenas-López ◽  
Kamran Jawed ◽  
Klaus Winzer ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Cupriavidus Necator ◽  
Rrna Genes ◽  
Trna Genes ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Cupriavidus Necator H16

The hydrogen-utilizing strain Cupriavidus necator H16 (DSM 428) was sequenced using a combination of PacBio and Illumina sequencing. Annotation of this strain reveals 6,543 protein-coding genes, 263 pseudogenes, 64 tRNA genes, and 15 rRNA genes.

scholarly journals Complete Genome Sequence of Stenotrophomonas Phage Mendera

2020 ◽  
Vol 9 (1) ◽  
Author(s):  
Kameron D. Garza ◽  
Heather Newkirk ◽  
Russell Moreland ◽  
Carlos F. Gonzalez ◽  
Mei Liu ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Stenotrophomonas Maltophilia ◽  
Human Pathogen ◽  
Base Pairs ◽  
Content Type ◽  
Genomic Annotation ◽  
Opportunistic Human Pathogen

Stenotrophomonas maltophilia is an emerging opportunistic human pathogen. In this report, we describe the isolation and genomic annotation of the S. maltophilia-infecting bacteriophage Mendera. A myophage of 159,961 base pairs, Mendera is T4-like and related most closely to Stenotrophomonas phage IME-SM1.

scholarly journals Complete Genome Sequence of Mycobacterium chimaera Strain CDC2015-22-71

2017 ◽  
Vol 5 (31) ◽  
Author(s):  
Nabeeh A. Hasan ◽  
Adrian Lawsin ◽  
K. Allison Perry ◽  
Efe Alyanak ◽  
Nadege C. Toney ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Nontuberculous Mycobacterium ◽  
Open Heart ◽  
Mycobacterium Species ◽  
Content Type ◽  
Invasive Infections

ABSTRACT Mycobacterium chimaera is a nontuberculous mycobacterium species commonly found in the environment. Here, we report the first complete genome sequence of a strain from the investigation of invasive infections following open-heart surgeries that used contaminated LivaNova Sorin Stockert 3T heater-cooler devices.

scholarly journals Complete Genome Sequence of Serotype III Streptococcus agalactiae Sequence Type 17 Strain 874391

2017 ◽  
Vol 5 (42) ◽  
Author(s):  
Matthew J. Sullivan ◽  
Brian M. Forde ◽  
Darren W. Prince ◽  
Deepak S. Ipe ◽  
Nouri L. Ben Zakour ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Streptococcus Agalactiae ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Historical Context ◽  
Invasive Disease ◽  
Sequence Type ◽  
Content Type ◽  
Disproportionate Number

ABSTRACT Here we report the complete genome sequence of Streptococcus agalactiae strain 874391. This serotype III isolate is a member of the hypervirulent sequence type 17 (ST-17) lineage that causes a disproportionate number of cases of invasive disease in humans and mammals. A brief historical context of the strain is discussed.

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