scholarly journals Complete Genome Sequence of Campylobacter armoricus CA639, Which Carries Two Plasmids, Compiled Using Oxford Nanopore and Illumina Sequencing Technologies

2020 ◽  
Vol 9 (1) ◽  
Author(s):  
Amine M. Boukerb ◽  
Julien Schaeffer ◽  
Joëlle Serghine ◽  
Gregory Carrier ◽  
Françoise S. Le Guyader ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Illumina Sequencing ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sequence Data ◽  
Hybrid Approach ◽  
Circular Chromosome ◽  
Sequencing Technologies ◽  
Oxford Nanopore

As determined by a hybrid approach combining Oxford Nanopore MinION and Illumina MiniSeq sequence data, Campylobacter armoricus strain CA639 harbored a circular chromosome of 1,688,169 bp with a G+C content of 28.47% and two plasmids named pCA639-1 and pCA639-2, with lengths of 51,123 and 28,139 bp, and G+C contents of 26.5% and 28.45%, respectively.

scholarly journals Complete Genome Sequence of Pseudomonas coronafaciens pv. oryzae 1_6

2020 ◽  
Vol 9 (3) ◽  
Author(s):  
David A. Baltrus ◽  
Meara Clark
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Hybrid Approach ◽  
Flow Cell ◽  
Circular Chromosome ◽  
Content Type ◽  
Circular Plasmid ◽  
Oxford Nanopore

Pseudomonas coronafaciens pv. oryzae 1_6 was originally isolated as a phytopathogen of rice. Here, we report a complete genome sequence for this strain, containing a circular chromosome and one circular plasmid, assembled using a hybrid approach combining Illumina paired-end reads and longer reads sequenced on an Oxford Nanopore Flongle flow cell.

scholarly journals Complete Genome Sequence of Streptococcus pneumoniae Strain Rx1, a Hex Mismatch Repair-Deficient Standard Transformation Recipient

2021 ◽  
Vol 10 (41) ◽  
Author(s):  
Anna Maria Cuppone ◽  
Lorenzo Colombini ◽  
Valeria Fox ◽  
David Pinzauti ◽  
Francesco Santoro ◽  
...  
Keyword(s):  
Streptococcus Pneumoniae ◽  
Mismatch Repair ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gc Content ◽  
Open Reading Frames ◽  
Circular Chromosome ◽  
Content Type ◽  
Sequencing Technologies

The complete genome sequence of Streptococcus pneumoniae strain Rx1, a Hex mismatch repair-deficient standard transformation recipient, was obtained by combining Nanopore and Illumina sequencing technologies. The genome consists of a 2.03-Mb circular chromosome, with 2,054 open reading frames and a GC content of 39.72%.

scholarly journals Complete Genome Sequence of the Autotrophic Acetogen Clostridium formicaceticum DSM 92T Using Nanopore and Illumina Sequencing Data

2017 ◽  
Vol 5 (21) ◽  
Author(s):  
Michael M. Karl ◽  
Anja Poehlein ◽  
Frank R. Bengelsdorf ◽  
Rolf Daniel ◽  
Peter Dürre
Keyword(s):  
Carbon Monoxide ◽  
Genome Sequence ◽  
Illumina Sequencing ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sequencing Data ◽  
Circular Chromosome ◽  
Content Type ◽  
Illumina Sequencing Data

ABSTRACT Here, we report the closed genome sequence of Clostridium formicaceticum, an Rnf- and cytochrome-containing autotrophic acetogen that is able to convert carbon monoxide to acetate using the Wood-Ljungdahl pathway. The genome consists of a circular chromosome (4.59 Mb).

scholarly journals Complete Genome Sequence of Pasteurella multocida HuN001, a Capsular Type A Strain from a Human

2021 ◽  
Vol 10 (26) ◽  
Author(s):  
Lin Lin ◽  
Chunhui Li ◽  
Fei Wang ◽  
Xueying Wang ◽  
Yue Zhang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Pasteurella Multocida ◽  
Sputum Sample ◽  
Capsular Type ◽  
Circular Chromosome ◽  
Content Type ◽  
Oxford Nanopore ◽  
Oxford Nanopore Technologies

Here, we report the complete genome sequence of clinical Pasteurella multocida strain HuN001, which was cultured from a sputum sample from a patient with pneumonia. Oxford Nanopore Technologies sequencing provided a complete genome sequence of P. multocida HuN001, which contains a 2,287,216-bp circular chromosome with an average G+C content of 40.33%.

scholarly journals Complete Genome Sequence of Staphylococcus arlettae Strain P2, Isolated from a Laboratory Environment

2019 ◽  
Vol 8 (45) ◽  
Author(s):  
Hiroki Yu ◽  
Makoto Taniguchi ◽  
Kazuma Uesaka ◽  
Apirak Wiseschart ◽  
Kusol Pootanakit ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Hybrid Approach ◽  
Illumina Miseq ◽  
Sequencing Data ◽  
Content Type ◽  
Short Read Sequencing ◽  
Oxford Nanopore ◽  
Long Read

Staphylococcus arlettae is one coagulase-negative species in the bacterial genus Staphylococcus. Here, we describe the closed complete genome sequence of S. arlettae strain P2, which was obtained using a hybrid approach combining Oxford Nanopore long-read and Illumina MiSeq short-read sequencing data.

scholarly journals Complete Genome Sequence of Paradevosia shaoguanensis Type Strain J5-3, Obtained Using Nanopore and Illumina Sequencing Technologies

2021 ◽  
Vol 10 (23) ◽  
Author(s):  
Yang Wang ◽  
Songxue Wang
Keyword(s):  
Genome Sequence ◽  
Illumina Sequencing ◽  
Genome Analysis ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Culture Collection ◽  
Comparative Genome Analysis ◽  
Content Type ◽  
Sequencing Technologies

The complete genome sequence of Paradevosia shaoguanensis J5-3 T (China General Microbiological Culture Collection Center [CGMCC] 1.12430 T ) is presented here. The complete genome sequence of P . shaoguanensis J5-3 T will provide valuable references for classification and comparative genome analysis.

scholarly journals Complete Genome Sequence of Caulobacter sp. Strain S6, Obtained Using Oxford Nanopore and Illumina Sequencing

2021 ◽  
Vol 10 (39) ◽  
Author(s):  
Cuiyang Zhang ◽  
Jun Huang ◽  
Wei Ouyang ◽  
Yongmei Li ◽  
Ying Tang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Illumina Sequencing ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Oxford Nanopore

We report the complete genome sequence of Caulobacter sp. strain S6, generated from Oxford Nanopore and Illumina sequencing. The assembled genome comprises a chromosome with a length of 5.5 Mb and a plasmid of 96,014 bp.

scholarly journals Complete Genome Sequence of Mycobacterium xenopi JCM15661T, Obtained Using Nanopore and Illumina Sequencing Technologies

2020 ◽  
Vol 9 (10) ◽  
Author(s):  
Mitsunori Yoshida ◽  
Hanako Fukano ◽  
Takanori Asakura ◽  
Junzo Hisatsune ◽  
Yoshihiko Hoshino
Keyword(s):  
Genome Sequence ◽  
Illumina Sequencing ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Essential Information ◽  
Content Type ◽  
Sequencing Technologies ◽  
Mycobacterium Xenopi ◽  
Slow Growing

Mycobacterium xenopi is a slow-growing mycobacterial organism for which pathogenic features are unclear. Here, we report the complete genome sequence of an M. xenopi type strain. This sequence will provide essential information for future taxonomic and comparative genome studies of these mycobacteria.

scholarly journals Complete Genome Sequence of a Streptococcus pyogenes Serotype M12 Scarlet Fever Outbreak Isolate from China, Compiled Using Oxford Nanopore and Illumina Sequencing

2018 ◽  
Vol 6 (18) ◽  
pp. e00389-18 ◽  
Author(s):  
Yuanhai You ◽  
Yongjun Kou ◽  
Longfei Niu ◽  
Qiong Jia ◽  
Yahui Liu ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Streptococcus Pyogenes ◽  
Illumina Sequencing ◽  
Complete Genome Sequence ◽  
Scarlet Fever ◽  
Complete Genome ◽  
Content Type ◽  
Oxford Nanopore ◽  
Outbreak Isolate

ABSTRACT The incidence of scarlet fever cases remains high in China. Here, we report the complete genome sequence of a Streptococcus pyogenes isolate of serotype M12, which has been confirmed as the predominant serotype in recent outbreaks. Genome sequencing was achieved by a combination of Oxford Nanopore MinION and Illumina methodologies.

Sign in / Sign up

Export Citation Format

Share Document