Molecular forms and kinetic properties of phosphoenolpyruvate carboxylase from barnyard grass (Echinochloa crus-galli(L.) Beauv.: Poaceae)

2000 ◽  
Vol 78 (5) ◽  
pp. 619-628
Author(s):  
Nathalie Hamel ◽  
Jean-Pierre Simon
Keyword(s):  
Phosphoenolpyruvate Carboxylase ◽  
Kinetic Property ◽  
Thermal Adaptation ◽  
Catalytic Efficiency ◽  
Molecular Forms ◽  
Kinetic Properties ◽  
Barnyard Grass ◽  
Physiological Importance ◽  
Molecular Masses ◽  
Cold Inactivation

The thermal, kinetic, and electrophoretic properties of phosphoenolpyruvate carboxylase (PEPC, EC 4.1.1.31) were analyzed in plants from two ecotypes of barnyard grass (Echinochloa crus-galli (L.) Beauv.: Poaceae) originated from sites of contrasting climates in Quebec (QUE) and Mississippi (MISS). The thermostability, cold inactivation, the apparent energy of activation (Ea), the Michaelis-Menten constant (Km), and Vmax/Kmratios for phosphoenolpyruvate (PEP) and Mg2+were analyzed with desalted Sephadex G-25 crude PEPC extracts, with partially purified PEPC from the polyethylene glycol (PEG) 13% fraction and with purified PEPC obtained after elution from DEAE-Sepharose affinity chromatography. PEPC from illuminated leaves from both ecotypes consisted of one isomorph with the same electrophoretic mobility in polyacrylamide gels, similar molecular masses for the native enzyme (400 kDa) and for each subunit of the tetramer (100 kDa), and a same isoelectric point (pI) of 4.95. The only kinetic property for PEPC for which differences of physiological importance among ecotypes were observed at the three levels of purification was Kmfor PEP for which values for QUE plants were significantly lower at low assay temperatures. Differences among ecotypes for thermostability were only observed in assays with crude and partially purified PEPC extracts, while no differences were found for cold inactivation rates, Km(Mg2+) estimates at any level of purification or for Vmax/Kmratios (PEP or Mg2+) from purified PEPC. Significant differences among the two ecotypes were found for catalytic constant (Kcat) estimates obtained with purified PEPC. However, results show higher catalytic efficiency for PEPC from MISS plants at high assay temperatures but no indication of an improved catalytic efficiency for PEPC from QUE plants at low assay temperatures. The lack of ecotypic differences for most thermal and kinetic properties observed with purified PEPC casts doubts about the evolutionary interpretations of results obtained in previous kinetic comparative analyses, which were based on crude or partially purified enzymatic preparations of PEPC extracted from E. crus-galli plants.Key words: phosphoenolpyruvate carboxylase, enzyme kinetics, thermal adaptation, barnyard grass, electrophoresis, Echinochloa crus-galli.

Molecular forms and thermal and kinetic properties of purified glutathione reductase from two populations of barnyard grass (Echinochloa crus-galli(L.) Beauv.: Poaceae) from contrasting climatic regions in North America

2000 ◽  
Vol 78 (7) ◽  
pp. 969-980 ◽  
Author(s):  
Nadia Hakam ◽  
Jean-Pierre Simon
Keyword(s):  
Glutathione Reductase ◽  
Thermal Adaptation ◽  
Catalytic Efficiency ◽  
Molecular Forms ◽  
Kinetic Properties ◽  
Barnyard Grass ◽  
Climatic Regions ◽  
Two Populations ◽  
Menten Constant

The thermal, kinetic, and electrophoretic properties of purified glutathione reductase (GR; EC 1.6.4.2) were analyzed in plants from two ecotypes of barnyard grass (Echinochloa crus-galli (L.) Beauv.: Poaceae) originating from sites of contrasting climates in Quebec (QUE) and Mississippi (MISS). Crude and purified GR preparations from plants of both ecotypes consisted of one homodimer isomorph with the same electrophoretic mobility in polyacrylamide gels, a similar molecular mass for the native enzyme (98 kDa) and for each subunit of the dimer (44 kDa), and an identical pI of 5.9. The electrophoretic profile of GR purified from cold-acclimated plants at 14°C light (L) : 8°C dark (D) for 10 days was similar to that of GR from plants grown at 26°C L : 20°C D. Specific activities of purified GR from QUE plants were significantly higher than those of MISS plants. In vitro GR activities from QUE and MISS plants were not differentially affected by thermodenaturation at 55 or 65°C or by cold treatments at 2°C. Apparent energies of activation (Ea) of GR purified from QUE and MISS plants were similar with the exception of estimates of Ea(oxidized glutathione) for Q10(15-5°C) for which significantly lower values were obtained for QUE plants. No differences of physiological significance were observed for Km(Michaelis-Menten constant) values of GR purified from QUE and MISS plants. However, both Vmaxand Kcat(turnover numbers) estimates were significantly higher for GR purified from QUE plants over most of the range of assay temperatures, suggesting superior catalytic efficiency for the enzyme of the cold-adapted ecotype from Québec.Key words: barnyard grass, ecotypes, electrophoresis, enzyme kinetics, glutathione reductase, thermal adaptation.

Molecular Forms and Kinetic Properties of Pyruvate, PI Dikinase From Two Populations of Barnyard Grass (Echinochloa crus-galli) From Sites of Contrasting Climates

1996 ◽  
Vol 23 (2) ◽  
pp. 191 ◽  
Author(s):  
JP Simon
Keyword(s):  
Specific Activity ◽  
Molecular Forms ◽  
Kinetic Properties ◽  
Activity Levels ◽  
Light Activation ◽  
Turnover Number ◽  
Barnyard Grass ◽  
Molecular Weights ◽  
Kinetics Of ◽  
Two Populations

Plants from two populations of the C4 barnyard grass (Echinochloa crus-galli (L.) Beauv.) from Qu�bec (QUE) and Mississippi (MISS) were acclimated under controlled conditions to 26/20 and 14/8�C daylnight. The apparent energy of activation (Ea, Km for pyruvate, Vmax/Km ratios, Kcat (substrate turnover number) and specific activity of pyruvate, PI dikinase (PPDK, EC 2.7.9.1) were analysed from partially purified Sephadex G-25 extracts of PPDK from leaves and from highly purified PPDK. PPDK from both populations consisted of one isomorph with the same electrophoretic mobility in polyacrylamide gels and similar molecular weights for the native enzyme (385 kDa) and for the subunit of the tetramer (94.8 kDa). No significant differences were observed for any of the kinetic properties of partially purified or purified PPDK or for the specific activity per mg protein of purified PPDK extracted from plants of the two populations and acclimated to the two thermoperiods. Net photosynthetic rates (Ps) were positively correlated with PPDK activity levels (E) but ElPs ratios were lower than 1.0, ranging from 0.43 to 0.67. Results indicate that differences in activity levels, thermal properties and in the kinetics of light activation and dark inactivation of PPDK extracted from cold-acclimated MISS and QUE plants, as reported in earlier studies, are due to causes other than kinetic properties or electrophoretic characteristics of PPDK.

Kinetic properties of recombinant phosphomimic mutant of Zea mays phosphoenolpyruvate carboxylase (ZmPEPCS15D)

2020 ◽  
Vol 25 (1) ◽  
pp. 1-8
Author(s):  
Madhurima Das ◽  
Mansi ◽  
Monika Dalal ◽  
Viswanathan Chinnusamy
Keyword(s):  
Zea Mays ◽  
Phosphoenolpyruvate Carboxylase ◽  
Kinetic Properties

scholarly journals Distribution and paralogue specificity of mammalian deSUMOylating enzymes

2010 ◽  
Vol 430 (2) ◽  
pp. 335-344 ◽  
Author(s):  
Nagamalleswari Kolli ◽  
Jowita Mikolajczyk ◽  
Marcin Drag ◽  
Debaditya Mukhopadhyay ◽  
Nela Moffatt ◽  
...  
Keyword(s):  
Mammalian Cells ◽  
Catalytic Efficiency ◽  
Covalent Attachment ◽  
Kinetic Properties ◽  
Kinetic Measurements ◽  
Systematic Analysis ◽  
Catalytic Domains ◽  
Irreversible Inhibitors ◽  
Marked Preference ◽  
Relative Selectivity

The covalent attachment of SUMO (small ubiquitin-like protein modifier) to target proteins results in modifications in their activity, binding interactions, localization or half-life. The reversal of this modification is catalysed by SENPs (SUMO-specific processing proteases). Mammals contain four SUMO paralogues and six SENP enzymes. In the present paper, we describe a systematic analysis of human SENPs, integrating estimates of relative selectivity for SUMO1 and SUMO2, and kinetic measurements of recombinant C-terminal cSENPs (SENP catalytic domains). We first characterized the reaction of each endogenous SENP and cSENPs with HA–SUMO-VS [HA (haemagglutinin)-tagged SUMO-vinyl sulfones], active-site-directed irreversible inhibitors of SENPs. We found that all cSENPs and endogenous SENP1 react with both SUMO paralogues, whereas all other endogeneous SENPs in mammalian cells and tissues display high selectivity for SUMO2-VS. To obtain more quantitative data, the kinetic properties of purified cSENPs were determined using SUMO1- or SUMO2-AMC (7-amino-4-methylcoumarin) as substrate. All enzymes bind their respective substrates with high affinity. cSENP1 and cSENP2 process either SUMO substrate with similar affinity and catalytic efficiency; cSENP5 and cSENP6 show marked catalytic specificity for SUMO2 as measured by Km and kcat, whereas cSENP7 works only on SUMO2. Compared with cSENPs, recombinant full-length SENP1 and SENP2 show differences in SUMO selectivity, indicating that paralogue specificity is influenced by the presence of the variable N-terminal domain of each SENP. Our data suggest that SUMO2 metabolism is more dynamic than that of SUMO1 since most SENPs display a marked preference for SUMO2.

scholarly journals Phosphoenolpyruvate carboxylase from the crassulacean plant Bryophyllum fedtschenkoi Hamet et Perrier. Purification, molecular and kinetic properties

1978 ◽  
Vol 175 (2) ◽  
pp. 391-406 ◽  
Author(s):  
R Jones ◽  
M B Wilkins ◽  
J R Coggins ◽  
C A Fewson ◽  
A D B Malcolm
Keyword(s):  
Phosphoenolpyruvate Carboxylase ◽  
Gel Electrophoresis ◽  
Specific Activity ◽  
Polyacrylamide Gel Electrophoresis ◽  
Sodium Dodecyl ◽  
Deae Cellulose ◽  
Maximum Velocity ◽  
Single Band ◽  
Kinetic Properties ◽  
Subunit Structure

Phosphoenolpyruvate carboxylase from the Crassulacean plant Bryophyllum fedtschenkoi has been purified to homogenetity by DEAE-cellulose treatment, (NH4)2SO4 fractionation,, and chromatography on DEAE-cellulose and hydroxyapatite. Poly(ethylene glycol) is required in the extraction medium to obtain maximum enzyme activity. The purified enzyme has a specific activity of about 26 units/mg of protein at 25 degrees C. It gives a single band on sodium dodecyl sulphate/polyacrylamide-gel electrophoresis, corresponding to a mol.wt. of 105,000, and gives a single band on non-denaturing gel electrophoresis at pH8.4. Cross-linking studies at pH8.0 indicate that the subunit structure is tetrameric but that the dimer may also be an important unit of polymerization. Gel filtration results at pH6.7 confirm that the native enzyme is tetrameric with a concentration-dependent dissociation to a dimer. The kinetic behaviour is characterized by (i) relatively small variations in maximum velocity between pH5.5 and 9.0 with a double optimum, (ii) a reversible temperature-dependent inactivation between 30 and 45 degrees C, (iii) inhibition by malate, which is pH-sensitive, and (iv) almost Michaelis-Menten behaviour with phosphoenolpyruvate as the varied ligand but sigmoidal behaviour under suitable conditions with malate as the varied ligand. The findings are related to other studies to the possible role phosphoenolpyruvate carboxylase in controlling a circadian rhythm of CO2 fixation.

scholarly journals Re-examination of the roles of PEP and Mg2+ in the reaction catalysed by the phosphorylated and non-phosphorylated forms of phosphoenolpyruvate carboxylase from leaves of Zea mays

1998 ◽  
Vol 332 (3) ◽  
pp. 633-642 ◽  
Author(s):  
Alejandro TOVAR-MÉNDEZ ◽  
Rogelio RODRÍGUEZ-SOTRES ◽  
Dulce M. LÓPEZ-VALENTÍN ◽  
Rosario A. MUÑOZ-CLARES
Keyword(s):  
Active Site ◽  
Phosphoenolpyruvate Carboxylase ◽  
Metal Ion ◽  
Dissociation Constants ◽  
Physiological Role ◽  
Free Enzyme ◽  
Kinetic Properties ◽  
Allosteric Site ◽  
Physiological Concentration

To study the effects of phosphoenolpyruvate (PEP) and Mg2+ on the activity of the non-phosphorylated and phosphorylated forms of phosphoenolpyruvate carboxylase (PEPC) from Zea maysleaves, steady-state measurements have been carried out with the free forms of PEP (fPEP) and Mg2+ (fMg2+), both in a near-physiological concentration range. At pH 7.3, in the absence of activators, the initial velocity data obtained with both forms of the enzyme are consistent with the exclusive binding of MgPEP to the active site and of fPEP to an activating allosteric site. At pH 8.3, and in the presence of saturating concentrations of glucose 6-phosphate (Glc6P) or Gly, the free species also combined with the active site in the free enzyme, but with dissociation constants at least 35-fold that estimated for MgPEP. The latter dissociation constant was lowered to the same extent by saturating Glc6P and Gly, to approx. one-tenth and one-sixteenth in the non-phosphorylated and phosphorylated enzymes respectively. When Glc6P is present, fPEP binds to the active site in the free enzyme better than fMg2+, whereas the metal ion binds better in the presence of Gly. Saturation of the enzyme with Glc6P abolished the activation by fPEP, consistent with a common binding site, whereas saturation with Gly increased the affinity of the allosteric site for fPEP. Under all the conditions tested, our results suggest that fPEP is not able to combine with the allosteric site in the free enzyme, i.e. it cannot combine until after MgPEP, fPEP or fMg2+ are bound at the active site. The physiological role of Mg2+ in the regulation of the enzyme is only that of a substrate, mainly as part of the MgPEP complex. The kinetic properties of maize leaf PEPC reported here are consistent with the enzyme being well below saturation under the physiological concentrations of fMg2+ and PEP, particularly during the dark period; it is therefore suggested that the basal PEPC activity in vivois very low, but highly responsive to even small changes in the intracellular concentration of its substrate and effectors.

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