Infrared spectra of tautomers and rotamers of 9-methylguanine. An experimental and theoretical study

1991 ◽  
Vol 69 (11) ◽  
pp. 1705-1720 ◽  
Author(s):  
K. Szczepaniak ◽  
M. Szczesniak ◽  
W. Szajda ◽  
W. B. Person ◽  
J. Leszczynski

Both amino-oxo and amino-hydroxy tautomeric forms of 9-methylguanine have been identified in approximately equal abundance in. infrared studies of these molecules isolated in the hydrophobic environment of an argon matrix at 12 K. The amino-hydroxy tautomer occurs in two different rotamers correlated with the rotation of the OH group. The ratio of concentrations of the two rotamers is sensitive to UV irradiation, and this ratio then relaxes to an equilibrium value after irradiation is stopped. This sensitivity allows us to separate the experimental spectra related to the oxo tautomer and to each of the rotamers of the hydroxy tautomer. The relative concentrations of the amino-oxo and amino-hydroxy tautomers ([a-o]/[a-h] = K(o-h) = 1.0 ± 0.3) and of the two rotamers (K(h1-h2) = 0.31 ± 0.10 in an argon matrix at 12 K and about 30 ± 15 in the vapor at 470 K) are estimated from the observed relative infrared absorbances. From these relative concentrations the differences between the free energies of the tautomers (ΔG470 (o-h) = 0 ± 0.5 kJ mol−1) and of the two rotamers (ΔG(h1-h2) = 0.12 ± 0.03 kJ mol−1 in the argon matrix at 12 K and ΔG470 between +2 and −13 kJ mol−1 in the vapor at 470 K) have been estimated. The electronic absorption spectrum of 9-methylguanine isolated in the argon matrix at 12 K and the effect of brief ultraviolet irradiation on it have also been studied. In an effort to interpret the experimental results, ab initio calculations of the infrared spectra have been made for 9-methylguanine at the 3-21G//3-21G level. Comparison with the experimental spectra is of some help with the assignment of the infrared spectra for the different tautomers. Key words: 9-methylguanine, tautomerism, infrared and ultraviolet spectra, matrix isolation, ab initio calculation.

2014 ◽  
Vol 140 (16) ◽  
pp. 164511 ◽  
Author(s):  
Hugo F. M. C. Martiniano ◽  
Nuno Galamba ◽  
Benedito J. Costa Cabral

1998 ◽  
Vol 63 (8) ◽  
pp. 1094-1106 ◽  
Author(s):  
Juliusz G. Radziszewski ◽  
Piotr Kaszynski ◽  
Anders Friderichsen ◽  
Jens Abildgaard

Results of an experimental and theoretical study of cyclopenta-2,4-dienylideneketene (3), a highly unstable reactive intermediate, are reported. The ketene was prepared, under matrix isolation conditions at 4.2 or 10 K, by laser photocarbonylation of 1,2-didehydrobenzene (1) photogenerated earlier from phthalic anhydride (2). FTIR polarization measurements performed on partially photooriented samples of 3 immobilized in solid neon or argon provide infrared transition moment directions for most of the observed vibrations. Experimental results confirm that the ketene is bent, as predicted by ab initio calculations. Utilizing two isotopically modified 3, 3b and 3c, on the basis of the infrared absorption spectrum alone, we have analyzed and assigned its vibrations in a way, which leaves no doubt about the bent ketene structure. This work was motivated by a long standing confusion surrounding the assignments of the vibrations in 1,2-didehydrobenzene (1), especially of its "triple" bond stretch.


2015 ◽  
Vol 281 ◽  
pp. 15-21 ◽  
Author(s):  
Soo Jae Kim ◽  
Gunyeop Park ◽  
Moo Hwan Kim ◽  
Hyun Sun Park ◽  
JeHyun Baek

1970 ◽  
Vol 24 (1) ◽  
pp. 53-59 ◽  
Author(s):  
J. R. Clifton ◽  
D. M. Gruen

The absorption spectrum of CoCl2 molecules isolated in a nitrogen matrix and the fluorescence spectrum of CoCl2 molecules isolated in an argon matrix have been measured at liquid helium temperatures in the range 4000–50 000 cm−1. The absorption and fluorescence spectra in the 4000–25 000 cm−1 region were not mutually observable in the same host. Interpretations of the spectra are given, based on axial ligand field calculations for a 3d7 configuration including spin-orbit coupling interactions.


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