A NOVEL METHOD FOR REDUCING COMPUTATIONAL COMPLEXITY OF WHOLE GENOME SEQUENCE ALIGNMENT

Author(s):  
RYUICHIRO NAKATO ◽  
OSAMU GOTOH
2019 ◽  
Vol 67 (2) ◽  
pp. 307-313 ◽  
Author(s):  
Anna Valkó ◽  
Ervin Albert ◽  
Attila Cságola ◽  
Tünde Varga ◽  
Krisztián Kiss ◽  
...  

Porcine epidemic diarrhoea virus (PEDV) is an emerging enteropathogen, causing great economic losses in the pig industry. After many years of quiescence, PEDV was detected in Hungary in 2016 with a recombination in its S gene. In order to determine the extent of this change, an attempt was made to isolate the recombinant PEDV. This study was extended with a variety of samples collected from three separate farms with newly identified PEDV in 2018. The recombinant PEDV from 2016 was isolated successfully along with three viruses from 2018, and one isolate from the new cases was used for whole genome determination. Whole genome sequence alignment revealed the highest identity with recombinant Hungarian and Slovenian PEDV within the low-pathogenic European viruses. This suggests that these recombinant PEDV are circulating in this area and may spread to other parts of the continent.


2010 ◽  
Vol 36 (4) ◽  
pp. 688-694
Author(s):  
Yi-Jun WANG ◽  
Yan-Ping LÜ ◽  
Qin XIE ◽  
De-Xiang DENG ◽  
Yun-Long BIAN

2014 ◽  
Vol 40 (12) ◽  
pp. 2059
Author(s):  
Lin-Yi QIAO ◽  
Xin LI ◽  
Zhi-Jian CHANG ◽  
Xiao-Jun ZHANG ◽  
Hai-Xian ZHAN ◽  
...  

IDCases ◽  
2020 ◽  
pp. e01034
Author(s):  
Charlie Tan ◽  
Fang-I Lu ◽  
Patryk Aftanas ◽  
Kara Tsang ◽  
Samira Mubareka ◽  
...  

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